Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Clrn3Q8BHH8 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Clrn3Q8BHH8 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Clrn3Q8BHH8 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Clrn3Q8BHH8 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 AL590614.2-201ENSMUST00000225374 1937 ntBASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Gm19430-201ENSMUST00000193847 2137 ntBASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Clrn3Q8BHH8 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Mir1668-201ENSMUST00000184114 107 ntBASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gm29994-201ENSMUST00000195495 1193 ntBASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Clrn3Q8BHH8 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
Clrn3Q8BHH8 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Krtap5-1-202ENSMUST00000188274 742 ntBASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Gm7213-201ENSMUST00000215977 950 ntBASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 AC134329.2-201ENSMUST00000217897 428 ntBASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Clrn3Q8BHH8 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms