Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
Ift88Q61371 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Gm20760-201ENSMUST00000179197 648 ntBASIC18.23■□□□□ 0.51
Ift88Q61371 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.23■□□□□ 0.51
Ift88Q61371 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.23■□□□□ 0.51
Ift88Q61371 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Ift88Q61371 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC18.23■□□□□ 0.51
Ift88Q61371 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ift88Q61371 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.22■□□□□ 0.51
Ift88Q61371 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Ift88Q61371 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Ift88Q61371 AC153881.1-201ENSMUST00000214448 284 ntBASIC18.22■□□□□ 0.51
Ift88Q61371 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.22■□□□□ 0.51
Ift88Q61371 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Ift88Q61371 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.22■□□□□ 0.51
Ift88Q61371 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ift88Q61371 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.21■□□□□ 0.51
Ift88Q61371 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.21■□□□□ 0.51
Ift88Q61371 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.21■□□□□ 0.51
Ift88Q61371 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Ift88Q61371 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ift88Q61371 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Ift88Q61371 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Ift88Q61371 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.21■□□□□ 0.5
Ift88Q61371 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Ift88Q61371 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Gm13168-201ENSMUST00000121771 632 ntBASIC18.2■□□□□ 0.5
Ift88Q61371 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Ift88Q61371 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.2■□□□□ 0.5
Ift88Q61371 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.2■□□□□ 0.5
Ift88Q61371 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ift88Q61371 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Ift88Q61371 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.19■□□□□ 0.5
Ift88Q61371 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Ift88Q61371 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Ift88Q61371 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.19■□□□□ 0.5
Ift88Q61371 Odf3b-204ENSMUST00000227834 930 ntBASIC18.19■□□□□ 0.5
Ift88Q61371 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ift88Q61371 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms