Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Gm13186-201ENSMUST00000118031 316 ntBASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Gm16061-201ENSMUST00000122167 857 ntBASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Gm13474-201ENSMUST00000122466 815 ntBASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trav5d-4Q5R1F6 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Gm10252-201ENSMUST00000209541 832 ntBASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trav5d-4Q5R1F6 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm43799-201ENSMUST00000201845 579 ntBASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm7213-201ENSMUST00000215977 950 ntBASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trav5d-4Q5R1F6 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms