Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 RPA2P3-201ENST00000533268 770 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC007225.2-201ENST00000562529 256 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 OR4H6P-201ENST00000563771 921 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC015720.2-201ENST00000567709 334 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC023043.2-201ENST00000589678 1026 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 HMGB1P50-201ENST00000605814 607 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 DLEU2_5.1-201ENST00000615567 84 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AC116667.2-201ENST00000641075 823 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 AL033543.1-201ENST00000623440 13454 ntBASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.33□□□□□ -1.4
NPAS3Q8IXF0 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC108751.5-201ENST00000492880 1336 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AL731556.1-201ENST00000394628 3711 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 Y_RNA.19-201ENST00000362462 99 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RNU6-593P-201ENST00000364716 112 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RNU6-657P-201ENST00000383904 107 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 MIR433-201ENST00000384837 93 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 MIR1303-201ENST00000408625 86 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 MRPS18CP6-201ENST00000423587 223 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 CHIAP3-201ENST00000423668 1133 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 TUBB4BP6-201ENST00000437576 479 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 UBE2V1P5-201ENST00000440070 405 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC016027.4-201ENST00000450866 277 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RPS20P32-201ENST00000456044 356 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC103987.1-201ENST00000473394 348 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 TRBVB-201ENST00000477100 408 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RN7SL629P-201ENST00000489622 285 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RPL23AP72-201ENST00000492447 435 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC092436.1-201ENST00000506450 503 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RNA5SP362-201ENST00000516048 118 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 Y_RNA.683-201ENST00000516508 93 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 RNA5SP337-201ENST00000517007 109 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC073916.1-201ENST00000545095 130 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC051619.2-201ENST00000559063 397 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC090312.1-201ENST00000580637 348 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 MIR4424-201ENST00000585257 86 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC141002.1-201ENST00000607025 279 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 OR6R2P-201ENST00000609216 300 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC093799.2-201ENST00000610062 578 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC024255.1-201ENST00000614376 102 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AL137067.2-201ENST00000621202 131 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AL157831.2-201ENST00000564681 3095 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 AC012254.3-201ENST00000591183 2117 ntBASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.32□□□□□ -1.4
NPAS3Q8IXF0 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms