Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 AC004158.1-201ENST00000564508 4319 ntBASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
UBE3DQ7Z6J8 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 MTND5P1-201ENST00000445440 1375 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL592148.3-201ENST00000608771 2646 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.146-201ENST00000363549 102 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 U3.12-201ENST00000364498 214 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.445-201ENST00000384168 102 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.530-201ENST00000384587 101 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 RPL11P3-201ENST00000395256 523 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.615-201ENST00000410769 117 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL121776.1-201ENST00000429337 372 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 HMGB3P24-201ENST00000433260 622 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL138899.2-201ENST00000439139 499 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 ST13P14-201ENST00000474095 734 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC027575.1-201ENST00000481064 460 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 HMGB3P15-201ENST00000507326 574 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC021146.1-201ENST00000511202 716 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.665-201ENST00000516177 98 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC100784.1-201ENST00000522790 310 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 POLR3GP2-201ENST00000588366 668 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL022099.1-201ENST00000604551 712 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC080078.3-201ENST00000605407 463 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC010424.2-201ENST00000607594 443 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 RN7SL544P-201ENST00000617232 284 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 RN7SL763P-201ENST00000620922 284 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 AC009902.3-201ENST00000606235 2172 ntBASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
UBE3DQ7Z6J8 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 HSPA8P14-201ENST00000552265 1805 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 AL139276.1-201ENST00000311910 1001 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 MIR369-201ENST00000362155 70 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 SNORA64.1-201ENST00000362600 132 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 RNA5SP258-201ENST00000362750 119 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 RN7SKP44-201ENST00000363602 316 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.459-201ENST00000384251 102 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 RNU6-1207P-201ENST00000384343 107 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 RNY4P36-201ENST00000391116 96 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 AC096921.1-201ENST00000411661 375 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 HMGN1P20-201ENST00000411849 300 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 RPL31P45-201ENST00000419532 356 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 AC018630.2-202ENST00000422992 927 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 RPL34P6-201ENST00000432390 345 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 UBE2V1P13-201ENST00000436983 439 ntBASIC5.42□□□□□ -1.54
UBE3DQ7Z6J8 IPO7P1-201ENST00000442031 636 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 160.2 ms