Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH4O15457 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSH4O15457 RNA5SP267-201ENST00000364893 126 ntBASIC3.82□□□□□ -1.8
MSH4O15457 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH4O15457 RNU6-1005P-201ENST00000384519 107 ntBASIC3.82□□□□□ -1.8
MSH4O15457 MIR34B-201ENST00000385076 84 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AMD1P2-201ENST00000412936 992 ntBASIC3.82□□□□□ -1.8
MSH4O15457 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH4O15457 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.82□□□□□ -1.8
MSH4O15457 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH4O15457 AC017083.1-201ENST00000428093 483 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC005300.1-201ENST00000428401 373 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AL158071.1-201ENST00000430315 461 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC005189.1-201ENST00000431286 310 ntBASIC3.82□□□□□ -1.8
MSH4O15457 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH4O15457 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH4O15457 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH4O15457 NDUFS5P3-201ENST00000450668 321 ntBASIC3.82□□□□□ -1.8
MSH4O15457 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.82□□□□□ -1.8
MSH4O15457 TRBV8-2-201ENST00000475637 270 ntBASIC3.82□□□□□ -1.8
MSH4O15457 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.82□□□□□ -1.8
MSH4O15457 AC025768.1-201ENST00000510057 267 ntBASIC3.82□□□□□ -1.8
MSH4O15457 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.82□□□□□ -1.8
MSH4O15457 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH4O15457 RNU6-1102P-201ENST00000516149 96 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH4O15457 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.82□□□□□ -1.8
MSH4O15457 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.82□□□□□ -1.8
MSH4O15457 AC090751.1-201ENST00000566966 267 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC141257.3-201ENST00000572906 215 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH4O15457 ZNF92P2-201ENST00000600543 1059 ntBASIC3.82□□□□□ -1.8
MSH4O15457 SRGNP1-201ENST00000603392 451 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC079880.2-201ENST00000603790 1213 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC069304.3-201ENST00000603938 1084 ntBASIC3.82□□□□□ -1.8
MSH4O15457 AC012468.1-201ENST00000604888 430 ntBASIC3.82□□□□□ -1.8
MSH4O15457 U6.107-201ENST00000637108 79 ntBASIC3.82□□□□□ -1.8
MSH4O15457 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH4O15457 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
MSH4O15457 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH4O15457 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH4O15457 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH4O15457 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
MSH4O15457 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 RNA5SP387-201ENST00000364226 106 ntBASIC3.81□□□□□ -1.8
MSH4O15457 RNA5SP72-201ENST00000364442 117 ntBASIC3.81□□□□□ -1.8
MSH4O15457 RNU6-650P-201ENST00000365658 111 ntBASIC3.81□□□□□ -1.8
MSH4O15457 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH4O15457 RNU6-1279P-201ENST00000383917 103 ntBASIC3.81□□□□□ -1.8
MSH4O15457 MIR3074-201ENST00000384885 81 ntBASIC3.81□□□□□ -1.8
MSH4O15457 UBE2V1P11-201ENST00000411559 285 ntBASIC3.81□□□□□ -1.8
MSH4O15457 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH4O15457 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 RPS6P12-201ENST00000432491 726 ntBASIC3.81□□□□□ -1.8
MSH4O15457 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH4O15457 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH4O15457 RNFT1P2-201ENST00000443064 757 ntBASIC3.81□□□□□ -1.8
MSH4O15457 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH4O15457 AC097262.1-201ENST00000452559 548 ntBASIC3.81□□□□□ -1.8
MSH4O15457 AC112198.1-201ENST00000505369 1220 ntBASIC3.81□□□□□ -1.8
MSH4O15457 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 MIR2114-201ENST00000516645 80 ntBASIC3.81□□□□□ -1.8
MSH4O15457 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 OSBPL9P3-201ENST00000534523 595 ntBASIC3.81□□□□□ -1.8
MSH4O15457 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH4O15457 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.81□□□□□ -1.8
MSH4O15457 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.81□□□□□ -1.8
MSH4O15457 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH4O15457 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.81□□□□□ -1.8
MSH4O15457 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.81□□□□□ -1.8
MSH4O15457 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.81□□□□□ -1.8
MSH4O15457 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH4O15457 AC007529.1-201ENST00000418574 2178 ntBASIC3.8□□□□□ -1.8
MSH4O15457 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH4O15457 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH4O15457 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
MSH4O15457 RNU6-796P-201ENST00000391086 107 ntBASIC3.8□□□□□ -1.8
MSH4O15457 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
MSH4O15457 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH4O15457 AL138878.1-201ENST00000405131 347 ntBASIC3.8□□□□□ -1.8
MSH4O15457 RNU2-6P-201ENST00000411404 190 ntBASIC3.8□□□□□ -1.8
MSH4O15457 OR1AA1P-201ENST00000419597 916 ntBASIC3.8□□□□□ -1.8
MSH4O15457 CYP4F29P-201ENST00000420685 446 ntBASIC3.8□□□□□ -1.8
MSH4O15457 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.8□□□□□ -1.8
MSH4O15457 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.8□□□□□ -1.8
MSH4O15457 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH4O15457 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms