Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TRIM49D1C9J1S8 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 ATP5A1P2-201ENST00000412323 255 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 XKRYP4-201ENST00000414395 483 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 GTF2IP23-201ENST00000423746 351 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AL512637.2-201ENST00000431287 1256 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 XKRYP5-201ENST00000449659 483 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 OR5H3P-201ENST00000502817 919 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 SNORA70.14-201ENST00000516205 110 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 RNU6-415P-201ENST00000516252 97 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 SNORA64.4-201ENST00000516632 81 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC090666.1-201ENST00000578241 445 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 RN7SL622P-201ENST00000585292 275 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC022916.3-201ENST00000592961 742 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC084373.1-201ENST00000603311 235 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AL139022.2-201ENST00000606934 443 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC120053.1-201ENST00000607706 736 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AC090912.3-201ENST00000609775 533 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 AP004607.9-201ENST00000618202 316 ntBASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
TRIM49D1C9J1S8 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 MIR16-2-201ENST00000362117 81 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 RNU6-532P-201ENST00000384318 107 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL035405.1-201ENST00000400795 710 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 TAF9BP2-201ENST00000400856 499 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 SNORA11-201ENST00000408789 128 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC245291.1-201ENST00000419501 328 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC023128.2-201ENST00000420880 1223 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 BX890604.2-201ENST00000427883 474 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 NPM1P24-201ENST00000428039 894 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 ISCA1P2-201ENST00000438679 421 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 HMGB3P11-201ENST00000440127 604 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC069540.1-201ENST00000446320 988 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 U3.44-201ENST00000458938 192 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC108078.3-201ENST00000502633 489 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC021146.5-201ENST00000503544 545 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC025459.1-201ENST00000504072 156 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL161713.1-201ENST00000555538 145 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AP000919.1-202ENST00000581139 1264 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC107982.3-201ENST00000584957 985 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC006116.10-201ENST00000591836 581 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC133794.1-201ENST00000602731 914 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC079880.2-201ENST00000603790 1213 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC110792.4-201ENST00000609843 298 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 AC017071.1-201ENST00000564407 2204 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 EXOC5P1-201ENST00000510543 1969 ntBASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.41□□□□□ -1.86
TRIM49D1C9J1S8 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
TRIM49D1C9J1S8 AC004972.1-201ENST00000623934 2209 ntBASIC3.4□□□□□ -1.86
TRIM49D1C9J1S8 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
TRIM49D1C9J1S8 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.4□□□□□ -1.86
TRIM49D1C9J1S8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.4□□□□□ -1.87
TRIM49D1C9J1S8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.4□□□□□ -1.87
TRIM49D1C9J1S8 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms