Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 RNU6-984P-201ENST00000363236 109 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 Y_RNA.192-201ENST00000363977 102 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 Y_RNA.465-201ENST00000384293 102 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 MIR513A2-201ENST00000385249 127 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 RPL7P53-201ENST00000421245 739 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AL009174.1-201ENST00000426577 416 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 MTCO1P3-201ENST00000429327 192 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 RPL23AP76-201ENST00000441860 458 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 TPTE2P6-202ENST00000445572 1007 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC079776.3-201ENST00000450665 370 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 BX248409.1-201ENST00000455497 255 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 RN7SL271P-201ENST00000487601 295 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 RNA5SP179-201ENST00000517284 121 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC010198.2-201ENST00000550612 259 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 MIR3912-201ENST00000577566 105 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AL358072.1-201ENST00000604156 575 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC091167.4-201ENST00000605079 184 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC064807.4-201ENST00000607201 407 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC024941.1-201ENST00000612250 334 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AC116447.1-201ENST00000613153 453 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AL512506.2-201ENST00000624472 458 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 ATE1-AS1-202ENST00000636460 506 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AF001550.2-201ENST00000636643 217 ntBASIC4.28□□□□□ -1.72
SIX4Q9UIU6 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.28□□□□□ -1.72
SIX4Q9UIU6 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC074029.4-201ENST00000624796 1859 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC011155.1-201ENST00000316512 456 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 RNU6-213P-201ENST00000384051 104 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 SNORA57.1-201ENST00000391227 145 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 RSL24D1P4-201ENST00000400938 484 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AL356131.1-201ENST00000405826 414 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC048351.1-201ENST00000420064 602 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 MTND1P32-201ENST00000433043 938 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 GTF2IP7-202ENST00000436677 309 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC092013.1-201ENST00000438795 332 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC083863.1-201ENST00000438811 231 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 YWHAQP9-201ENST00000445891 512 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 HMGB1P48-201ENST00000446155 598 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC073587.1-201ENST00000447093 876 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 VN1R105P-201ENST00000486595 910 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC110792.1-201ENST00000491826 472 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 RPL31P61-201ENST00000496160 376 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC087369.1-201ENST00000520775 996 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC010306.1-201ENST00000523223 1117 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 OR4C2P-201ENST00000530855 1064 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AL356057.1-201ENST00000533798 831 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AL442163.2-201ENST00000553912 710 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 NBEAP1-201ENST00000554452 979 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC053481.4-201ENST00000583164 216 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
SIX4Q9UIU6 DPRXP5-201ENST00000604662 539 ntBASIC4.27□□□□□ -1.73
SIX4Q9UIU6 AC018638.7-201ENST00000605836 1114 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms