Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC025588.3-201ENST00000604182 274 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AC008162.1-201ENST00000604718 254 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AL670379.1-201ENST00000604752 252 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AL670379.5-201ENST00000605253 252 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AL670379.8-201ENST00000605353 252 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AL670379.7-201ENST00000605823 252 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AL596244.1-201ENST00000567068 3779 ntBASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
LIMD1Q9UGP4 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AL033543.1-201ENST00000623440 13454 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 CLCA3P-203ENST00000490028 2781 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 XIAPP3-201ENST00000312918 795 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RNU6-490P-201ENST00000362985 107 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 SET-203ENST00000372688 801 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RNU6-1127P-201ENST00000384580 107 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RPL23AP69-201ENST00000431134 458 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LAMTOR5P1-201ENST00000444290 270 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 HMGB3P21-201ENST00000452483 547 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RN7SL432P-201ENST00000484057 298 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC116655.1-201ENST00000508324 901 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RNU6-635P-201ENST00000516651 102 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RNU1-54P-201ENST00000517181 120 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 Y_RNA.721-201ENST00000517207 102 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 IGLVIV-53-201ENST00000520107 367 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 NRBF2P4-201ENST00000520874 850 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AP005902.1-201ENST00000521358 186 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC100870.1-201ENST00000522035 505 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 MIR4293-201ENST00000584305 78 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC123786.2-201ENST00000603459 275 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 SNORA74.4-201ENST00000607595 199 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 MIR6128-201ENST00000615528 109 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AC092608.2-201ENST00000624427 218 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 AL359976.1-201ENST00000418655 3528 ntBASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.68□□□□□ -1.34
LIMD1Q9UGP4 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 AL136531.3-201ENST00000624378 3658 ntBASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 AL031119.1-201ENST00000404707 1879 ntBASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
LIMD1Q9UGP4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms