Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RN7SKP247-201ENST00000411094 308 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC5.08□□□□□ -1.6
USP39Q53GS9 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.08□□□□□ -1.6
USP39Q53GS9 RPL7P11-201ENST00000437586 658 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 FHP1-201ENST00000442741 703 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC244505.5-201ENST00000443639 207 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 ARPC3P2-201ENST00000457786 533 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC010350.1-201ENST00000504908 231 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 ENPP7P11-201ENST00000505915 627 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.08□□□□□ -1.6
USP39Q53GS9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC008802.1-201ENST00000519121 791 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC020914.6-201ENST00000594327 272 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 DUXAP4-201ENST00000603046 613 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC011626.1-201ENST00000604710 562 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC008536.2-201ENST00000607284 349 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 STMN1P1-201ENST00000617809 440 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC018816.2-201ENST00000621460 353 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC007342.8-201ENST00000623278 678 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC015908.5-201ENST00000623289 343 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 AC019278.1-201ENST00000623516 479 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.08□□□□□ -1.6
USP39Q53GS9 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.08□□□□□ -1.6
USP39Q53GS9 AC093535.2-201ENST00000624769 2326 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 AP000542.2-201ENST00000623199 6179 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
USP39Q53GS9 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.08□□□□□ -1.6
USP39Q53GS9 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
USP39Q53GS9 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
USP39Q53GS9 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP39Q53GS9 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USP39Q53GS9 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP39Q53GS9 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USP39Q53GS9 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USP39Q53GS9 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 MIR589-201ENST00000385238 99 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
USP39Q53GS9 RPL21P67-201ENST00000402896 478 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 HMGB3P23-201ENST00000414981 585 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AL590609.2-201ENST00000421430 368 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 ATP5HP2-201ENST00000433885 485 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 SEPT7P5-201ENST00000434048 306 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 MTND4LP10-201ENST00000435146 291 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.07□□□□□ -1.6
USP39Q53GS9 COX6CP18-201ENST00000448769 222 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 RPL7P31-201ENST00000450192 724 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC011005.3-201ENST00000491624 395 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 RNF138P1-201ENST00000502765 546 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 DYNLL1P6-201ENST00000503440 264 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 MTCO3P9-201ENST00000506989 781 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC117522.3-201ENST00000507974 584 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 OR5AQ1P-201ENST00000527596 927 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 MIR3913-1-201ENST00000577744 102 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC233280.2-201ENST00000603917 1070 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC104687.2-201ENST00000604442 342 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC009159.1-201ENST00000618386 642 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.07□□□□□ -1.6
USP39Q53GS9 MIR7703-201ENST00000620784 77 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC073348.1-201ENST00000623002 331 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AP000648.2-201ENST00000624182 404 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 MFSD8-216ENST00000641147 4009 ntBASIC5.07□□□□□ -1.6
USP39Q53GS9 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.07□□□□□ -1.6
USP39Q53GS9 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
USP39Q53GS9 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms