Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC087312.1-201ENST00000471411 480 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AL157394.1-201ENST00000562983 1224 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC015917.1-201ENST00000579654 510 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 AC008507.1-201ENST00000587506 734 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 BNIP3P10-201ENST00000605360 577 ntBASIC3.86□□□□□ -1.79
CCDC88AQ3V6T2 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AC007496.3-201ENST00000624987 3443 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AL606537.1-201ENST00000607258 2011 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 RIOK3P1-201ENST00000418778 1528 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AMD1P2-201ENST00000412936 992 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 RPS12P18-201ENST00000442381 270 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 SLC31A1P1-201ENST00000451221 567 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 HMGB1P5-202ENST00000451497 985 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 TRBV12-1-201ENST00000479785 344 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 RPS4XP22-201ENST00000480755 780 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AC092851.1-201ENST00000535964 478 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 RPL12P50-201ENST00000603116 116 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AC015849.2-201ENST00000605738 409 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AL590808.1-201ENST00000618696 141 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 AP001005.3-201ENST00000622049 129 ntBASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC88AQ3V6T2 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC093909.5-201ENST00000621839 1799 ntBASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC104297.1-201ENST00000393779 870 ntBASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AL356057.1-202ENST00000402263 756 ntBASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC110741.2-201ENST00000605278 268 ntBASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AL592295.2-201ENST00000612578 206 ntBASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 AC132825.8-201ENST00000640783 297 ntBASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CCDC88AQ3V6T2 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 AC073325.2-201ENST00000339545 159 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 RSL24D1P4-201ENST00000400938 484 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 MIR1261-201ENST00000408659 82 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 PPIAP17-201ENST00000438507 471 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 OR4C2P-201ENST00000530855 1064 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 AC015871.2-201ENST00000603605 948 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 AC004832.5-201ENST00000608677 401 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 uc_338.32-201ENST00000615087 172 ntBASIC3.84□□□□□ -1.8
CCDC88AQ3V6T2 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 OR13C3-201ENST00000374781 1108 ntBASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 FAR1P1-201ENST00000427163 934 ntBASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 RPL21P112-201ENST00000434403 463 ntBASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 BX276092.4-201ENST00000452056 248 ntBASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 AC109329.2-201ENST00000519658 482 ntBASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC88AQ3V6T2 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 HMGB3P18-201ENST00000406327 590 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 AL512430.2-201ENST00000406786 339 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 RNA5SP293-201ENST00000410527 113 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 RPL31P12-201ENST00000422587 358 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 AC073069.1-201ENST00000428657 441 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 ARL5AP4-201ENST00000430731 512 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 CST9LP2-201ENST00000437612 320 ntBASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC88AQ3V6T2 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms