Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
COL28A1Q2UY09 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 Y_RNA.111-201ENST00000363248 100 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 RNU1-20P-201ENST00000363314 162 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AL049545.1-201ENST00000401856 572 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AL136133.1-201ENST00000413694 376 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 FGF7P5-201ENST00000441829 291 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 RPL21P89-201ENST00000444021 467 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 H2AFZP5-201ENST00000446960 382 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 IFNWP4-201ENST00000453148 294 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 NECAP1P2-201ENST00000455668 727 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 ANKRD26P4-201ENST00000455755 950 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 APOOP2-201ENST00000461561 539 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 RPL5P30-201ENST00000465511 891 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC104763.1-201ENST00000475274 360 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC116353.3-201ENST00000511215 249 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 MTCO1P30-201ENST00000515244 580 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 SNORA48.10-201ENST00000516965 160 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 PDCL2P2-201ENST00000533651 189 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC105129.1-201ENST00000560250 297 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 MTCYBP28-201ENST00000566728 1132 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 DUXAP3-201ENST00000603616 594 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AL357094.1-201ENST00000603845 844 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC007179.3-201ENST00000604976 235 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC080013.3-201ENST00000606839 578 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 AC005086.4-201ENST00000623065 213 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 DDX18P3-201ENST00000404856 2007 ntBASIC4.31□□□□□ -1.72
COL28A1Q2UY09 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.31□□□□□ -1.72
COL28A1Q2UY09 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 MAPK10-303ENST00000641324 3959 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 ZFRP1-201ENST00000457579 2970 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AP000776.1-201ENST00000530032 1663 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC021146.4-201ENST00000309229 279 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 OR4A15-201ENST00000314706 1035 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 RNU6-157P-201ENST00000383957 107 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 RNU6-921P-201ENST00000384361 107 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 MIR659-201ENST00000384963 97 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 RPL23AP47-201ENST00000408017 460 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 NUP35P2-201ENST00000416748 943 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AL138785.1-201ENST00000425821 331 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 MTND1P32-201ENST00000433043 938 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 MTND1P26-201ENST00000440488 538 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 Z77249.1-201ENST00000444622 1175 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AL162151.2-201ENST00000448875 158 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 snoU13.7-201ENST00000459220 104 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 RPS20P21-201ENST00000466859 343 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 RPL36AP41-201ENST00000493820 306 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 OR5H4P-201ENST00000510851 923 ntBASIC4.3□□□□□ -1.72
COL28A1Q2UY09 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC4.3□□□□□ -1.72
COL28A1Q2UY09 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms