Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A4P53420 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL4A4P53420 RSL24D1P8-201ENST00000434442 492 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A4P53420 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.49□□□□□ -1.85
COL4A4P53420 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A4P53420 IGLVIV-53-201ENST00000520107 367 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A4P53420 OR4R3P-201ENST00000525084 838 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 PSMA2P1-201ENST00000526365 646 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A4P53420 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.49□□□□□ -1.85
COL4A4P53420 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC112503.2-201ENST00000609005 552 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AP000770.2-201ENST00000623694 100 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AC018692.3-201ENST00000623929 123 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.49□□□□□ -1.85
COL4A4P53420 AC018529.3-201ENST00000624212 2254 ntBASIC3.49□□□□□ -1.85
COL4A4P53420 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
COL4A4P53420 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.48□□□□□ -1.85
COL4A4P53420 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A4P53420 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A4P53420 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A4P53420 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
COL4A4P53420 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A4P53420 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A4P53420 Y_RNA.110-201ENST00000363220 99 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL4A4P53420 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.48□□□□□ -1.85
COL4A4P53420 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.48□□□□□ -1.85
COL4A4P53420 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.48□□□□□ -1.85
COL4A4P53420 MTND3P4-201ENST00000453537 303 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 TPRKBP1-201ENST00000456243 481 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.48□□□□□ -1.85
COL4A4P53420 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.48□□□□□ -1.85
COL4A4P53420 AC082651.2-201ENST00000496833 166 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 RPL7P47-201ENST00000497299 556 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.48□□□□□ -1.85
COL4A4P53420 RNU1-143P-201ENST00000516296 146 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 OR8K2P-201ENST00000524645 927 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.48□□□□□ -1.85
COL4A4P53420 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.48□□□□□ -1.85
COL4A4P53420 MIR4425-201ENST00000580572 84 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 AC040904.1-201ENST00000590850 223 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.48□□□□□ -1.85
COL4A4P53420 AC103881.1-201ENST00000603476 538 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 U1.23-201ENST00000610293 146 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 RNU1-68P-201ENST00000615382 146 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.48□□□□□ -1.85
COL4A4P53420 AC091046.2-201ENST00000620775 665 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 U1.39-201ENST00000621562 146 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 AC006963.1-201ENST00000624003 1052 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 AC104820.1-201ENST00000624183 307 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 AL163152.1-201ENST00000642001 374 ntBASIC3.48□□□□□ -1.85
COL4A4P53420 CR383658.2-201ENST00000547576 1525 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A4P53420 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL4A4P53420 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 OR5T3-201ENST00000303059 1023 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 RPL5P18-201ENST00000406671 891 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 AC012065.2-201ENST00000421295 375 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A4P53420 GLRXP1-201ENST00000423261 334 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 AL365396.1-201ENST00000430854 671 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A4P53420 MTND2P2-201ENST00000434633 945 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A4P53420 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A4P53420 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A4P53420 UBE2V1P12-201ENST00000503954 474 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 AC093534.1-201ENST00000504977 132 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.47□□□□□ -1.85
COL4A4P53420 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 AC008993.2-201ENST00000631744 806 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
COL4A4P53420 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.47□□□□□ -1.85
COL4A4P53420 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.47□□□□□ -1.85
COL4A4P53420 AL022322.2-201ENST00000624072 20397 ntBASIC3.47□□□□□ -1.85
COL4A4P53420 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms