Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.88□□□□□ -1.79
BRCA1P38398 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.88□□□□□ -1.79
BRCA1P38398 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC3.88□□□□□ -1.79
BRCA1P38398 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.88□□□□□ -1.79
BRCA1P38398 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
BRCA1P38398 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.88□□□□□ -1.79
BRCA1P38398 HMGB1P50-201ENST00000605814 607 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 MIR622-201ENST00000638396 96 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 AC083843.2-201ENST00000568248 6253 ntBASIC3.88□□□□□ -1.79
BRCA1P38398 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
BRCA1P38398 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
BRCA1P38398 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
BRCA1P38398 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
BRCA1P38398 RN7SKP220-201ENST00000410611 288 ntBASIC3.87□□□□□ -1.79
BRCA1P38398 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.87□□□□□ -1.79
BRCA1P38398 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.87□□□□□ -1.79
BRCA1P38398 Z99127.2-201ENST00000441426 334 ntBASIC3.87□□□□□ -1.79
BRCA1P38398 BUD31P2-201ENST00000449374 300 ntBASIC3.87□□□□□ -1.79
BRCA1P38398 AC009812.2-201ENST00000517657 457 ntBASIC3.87□□□□□ -1.79
BRCA1P38398 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.87□□□□□ -1.79
BRCA1P38398 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
BRCA1P38398 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
BRCA1P38398 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
BRCA1P38398 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
BRCA1P38398 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 AC007342.7-201ENST00000624610 2337 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.86□□□□□ -1.79
BRCA1P38398 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.86□□□□□ -1.79
BRCA1P38398 RPS6P4-201ENST00000494693 758 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 AL035404.1-201ENST00000497982 568 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.86□□□□□ -1.79
BRCA1P38398 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.86□□□□□ -1.79
BRCA1P38398 AC025857.1-201ENST00000525252 377 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
BRCA1P38398 OR1AB1P-201ENST00000585564 761 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 AL096803.3-201ENST00000609032 532 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.86□□□□□ -1.79
BRCA1P38398 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
BRCA1P38398 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.86□□□□□ -1.79
BRCA1P38398 AC107027.3-201ENST00000565095 3473 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.86□□□□□ -1.79
BRCA1P38398 ZNF603P-201ENST00000405613 487 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 AC003685.2-201ENST00000422795 395 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 ELOCP18-201ENST00000434209 337 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.86□□□□□ -1.79
BRCA1P38398 AC005229.2-201ENST00000456995 399 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 BTF3L4P4-201ENST00000506381 449 ntBASIC3.86□□□□□ -1.79
BRCA1P38398 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC3.86□□□□□ -1.79
BRCA1P38398 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.86□□□□□ -1.79
BRCA1P38398 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.85□□□□□ -1.79
BRCA1P38398 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
BRCA1P38398 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
BRCA1P38398 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
BRCA1P38398 AC093908.1-201ENST00000623125 8092 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 JKAMPP1-201ENST00000413804 919 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.85□□□□□ -1.79
BRCA1P38398 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.85□□□□□ -1.79
BRCA1P38398 MTCYBP29-201ENST00000436327 1006 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.85□□□□□ -1.79
BRCA1P38398 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.85□□□□□ -1.79
BRCA1P38398 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.85□□□□□ -1.79
BRCA1P38398 HIGD1AP13-201ENST00000509878 289 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.85□□□□□ -1.79
BRCA1P38398 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.85□□□□□ -1.79
BRCA1P38398 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.85□□□□□ -1.79
BRCA1P38398 AC117490.2-201ENST00000610042 594 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 AL590808.1-201ENST00000618696 141 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 AC233309.1-201ENST00000619522 751 ntBASIC3.85□□□□□ -1.79
BRCA1P38398 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
BRCA1P38398 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.84□□□□□ -1.79
BRCA1P38398 MTND2P2-201ENST00000434633 945 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 HMGN2P7-201ENST00000456186 273 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.79
BRCA1P38398 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.84□□□□□ -1.79
BRCA1P38398 RPL7P47-201ENST00000497299 556 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
BRCA1P38398 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.84□□□□□ -1.79
BRCA1P38398 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.84□□□□□ -1.79
BRCA1P38398 AC109329.2-201ENST00000519658 482 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.84□□□□□ -1.79
BRCA1P38398 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.84□□□□□ -1.79
BRCA1P38398 AL049874.4-201ENST00000557593 255 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
BRCA1P38398 ELOCP29-201ENST00000588193 334 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 BNIP3P38-201ENST00000601117 544 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 AC145207.9-201ENST00000623802 325 ntBASIC3.84□□□□□ -1.79
BRCA1P38398 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
BRCA1P38398 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
BRCA1P38398 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
BRCA1P38398 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
BRCA1P38398 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
BRCA1P38398 AC009302.1-201ENST00000417147 390 ntBASIC3.84□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms