Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 FAM204CP-201ENST00000424489 642 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 RPS26P40-201ENST00000435209 294 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AL353898.1-201ENST00000444055 238 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 BUD31P2-201ENST00000449374 300 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 BTF3P5-201ENST00000457252 467 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 RNU7-170P-201ENST00000459303 61 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA9P31269 AC004069.2-201ENST00000505438 1114 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AC010285.3-201ENST00000511668 676 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 MTND2P31-201ENST00000512602 616 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.67□□□□□ -1.82
HOXA9P31269 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA9P31269 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA9P31269 AL133457.1-201ENST00000564251 987 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA9P31269 AC006270.2-201ENST00000578523 652 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AC012493.2-201ENST00000595083 291 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC3.67□□□□□ -1.82
HOXA9P31269 AP003117.2-201ENST00000606010 545 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA9P31269 AC084036.1-201ENST00000609190 508 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 AL133383.2-201ENST00000622958 2336 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
HOXA9P31269 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA9P31269 AP001486.2-201ENST00000561652 5113 ntBASIC3.67□□□□□ -1.82
HOXA9P31269 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA9P31269 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
HOXA9P31269 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA9P31269 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 GABPAP-201ENST00000419271 1356 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 HSPA8P1-201ENST00000425843 1833 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AL589655.1-201ENST00000405398 482 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 RNU2-37P-201ENST00000410695 177 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 MTATP6P19-201ENST00000413797 659 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 RPL21P109-201ENST00000422213 475 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 OSTCP5-201ENST00000425293 453 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA9P31269 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA9P31269 AC089999.1-201ENST00000460336 374 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC078785.3-201ENST00000476607 425 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 RPL21P103-201ENST00000479921 488 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA9P31269 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA9P31269 RPL21P13-201ENST00000488305 481 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXA9P31269 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA9P31269 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA9P31269 IGKV2-26-201ENST00000518305 343 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 HIGD1AP18-201ENST00000520730 278 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA9P31269 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXA9P31269 AP004242.1-201ENST00000533701 349 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA9P31269 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXA9P31269 SNRPGP1-201ENST00000553864 222 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXA9P31269 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXA9P31269 BMS1P7-201ENST00000602440 1052 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AF131215.7-201ENST00000602443 707 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC006557.5-201ENST00000603126 811 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AL021368.1-201ENST00000607490 540 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 MIR7112-201ENST00000616126 65 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AC104307.1-201ENST00000616142 196 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 AF127577.6-201ENST00000623352 2191 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 NMD3P1-201ENST00000439704 1488 ntBASIC3.66□□□□□ -1.82
HOXA9P31269 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXA9P31269 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
HOXA9P31269 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXA9P31269 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXA9P31269 FRG1CP-201ENST00000358464 769 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 MIR423-201ENST00000362201 94 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA9P31269 AL512649.1-201ENST00000428997 581 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 MRPS18BP2-201ENST00000434310 759 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA9P31269 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 RPS20P32-201ENST00000456044 356 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 SETP6-201ENST00000479329 568 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA9P31269 FCF1P8-201ENST00000510322 597 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 AC016550.3-201ENST00000515706 767 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 OR4U1P-201ENST00000554958 912 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXA9P31269 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXA9P31269 AL731537.2-201ENST00000561565 951 ntBASIC3.65□□□□□ -1.83
HOXA9P31269 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXA9P31269 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms