Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HOXD3P31249 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXD3P31249 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HOXD3P31249 GNAS-202ENST00000306090 477 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 RNY4P24-201ENST00000362735 96 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 MIR192-201ENST00000384915 110 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 EIF5P1-201ENST00000400019 1231 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AL078599.1-201ENST00000402075 293 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 Z97832.1-201ENST00000402490 328 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AL035079.1-201ENST00000405210 287 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 HMGN1P14-201ENST00000412459 517 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 RPL12P9-201ENST00000412942 488 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC079809.1-201ENST00000415468 276 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC245028.1-201ENST00000423259 256 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AL445669.1-201ENST00000426743 755 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD3P31249 RPL34P20-201ENST00000442771 351 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC244505.5-201ENST00000443639 207 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC112498.1-201ENST00000444401 332 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 GEMIN8P3-201ENST00000445417 720 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AL354714.3-201ENST00000447284 493 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC093392.2-201ENST00000450682 337 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 MTCO3P2-201ENST00000457365 171 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 SNORD42A-201ENST00000459584 64 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 FTH1P2-201ENST00000466086 412 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC140172.1-201ENST00000502928 141 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC010350.1-201ENST00000504908 231 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC109464.2-201ENST00000510242 943 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC104986.1-201ENST00000517978 436 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD3P31249 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.9□□□□□ -1.79
HOXD3P31249 AP004247.1-201ENST00000531556 1289 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD3P31249 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 EEF1B2P4-201ENST00000551398 348 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC063949.1-201ENST00000552900 865 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXD3P31249 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD3P31249 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HOXD3P31249 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 MTCYBP13-201ENST00000578634 1093 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 MIR4270-201ENST00000581799 70 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 PRPF19P1-201ENST00000584766 898 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 AC105254.2-201ENST00000603636 436 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC010857.1-201ENST00000606398 594 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 AP005432.2-201ENST00000608162 586 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AL627230.1-201ENST00000613077 211 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AL591926.8-201ENST00000616876 211 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC104010.1-201ENST00000616889 150 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 AC009237.17-201ENST00000618111 748 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 AP000346.3-201ENST00000622821 210 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 U6.101-201ENST00000637707 76 ntBASIC3.9□□□□□ -1.79
HOXD3P31249 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD3P31249 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HOXD3P31249 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXD3P31249 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXD3P31249 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXD3P31249 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD3P31249 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
HOXD3P31249 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 MIR649-201ENST00000384843 97 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 RNU6-952P-201ENST00000391164 108 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC016769.3-201ENST00000396562 315 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 RAB28P1-201ENST00000411517 641 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 MTND1P21-201ENST00000412991 285 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 COX6CP13-201ENST00000428703 226 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 NPM1P34-201ENST00000428821 893 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD3P31249 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD3P31249 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms