Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AP000790.1-201ENST00000528891 737 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 DEFB109D-201ENST00000529497 240 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 ZNF321P-202ENST00000550843 495 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 NBEAP1-201ENST00000554452 979 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC138915.2-201ENST00000569776 97 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 RN7SL690P-201ENST00000582087 240 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 MIR4715-201ENST00000584117 79 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 SNORD39.3-201ENST00000584451 71 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AL353778.1-201ENST00000603149 408 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AL357094.1-201ENST00000603845 844 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC010857.1-201ENST00000606398 594 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC231759.1-201ENST00000616455 597 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC017037.3-201ENST00000625016 472 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 SAGE2P-201ENST00000420011 2126 ntBASIC3.7□□□□□ -1.82
NKX3-1Q99801 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.7□□□□□ -1.82
NKX3-1Q99801 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
NKX3-1Q99801 AC025031.4-201ENST00000621248 3271 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 XPOTP1-201ENST00000443317 2398 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
NKX3-1Q99801 RNA5SP388-201ENST00000362584 119 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RNU5D-1-201ENST00000363299 116 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 SNORD113-6-201ENST00000363345 75 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RNU6-115P-201ENST00000364310 107 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RNU6-444P-201ENST00000383988 108 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RNA5SP306-201ENST00000411087 107 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 P2RY10P2-201ENST00000416730 913 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AL161631.1-201ENST00000417933 486 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC092634.6-201ENST00000418558 192 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC233981.1-201ENST00000423224 461 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC005345.1-201ENST00000431868 217 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 ELOCP18-201ENST00000434209 337 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC114495.1-201ENST00000441274 436 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC093267.1-201ENST00000489176 961 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 MTND2P26-201ENST00000528255 1029 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC005832.3-201ENST00000537929 631 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC023050.2-201ENST00000544968 387 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
NKX3-1Q99801 TRAV15-201ENST00000556680 249 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AGGF1P8-201ENST00000562979 1000 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC093519.1-201ENST00000566109 298 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC011477.5-201ENST00000586571 259 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 MIR432-201ENST00000606207 94 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AL451074.6-201ENST00000608512 729 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC008013.2-202ENST00000637965 364 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 AC139713.2-214ENST00000642059 1811 ntBASIC3.69□□□□□ -1.82
NKX3-1Q99801 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
NKX3-1Q99801 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.69□□□□□ -1.82
NKX3-1Q99801 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 AP001486.2-201ENST00000561652 5113 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms