Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 DUXAP11-201ENST00000603858 526 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC010680.3-201ENST00000604215 520 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL034351.1-201ENST00000605288 668 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL391497.1-201ENST00000608671 547 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AP000894.4-201ENST00000610185 483 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC005962.2-201ENST00000611427 652 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL121612.2-201ENST00000612261 482 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL627230.1-201ENST00000613077 211 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AC116447.1-201ENST00000613153 453 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL591926.8-201ENST00000616876 211 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC098679.5-201ENST00000624394 571 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 UOX-205ENST00000640983 544 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXA1P49639 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA1P49639 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA1P49639 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA1P49639 AC009229.4-201ENST00000623854 1947 ntBASIC3.82□□□□□ -1.8
HOXA1P49639 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA1P49639 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA1P49639 ZNF833P-201ENST00000424938 1494 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA1P49639 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 Y_RNA.25-201ENST00000362528 102 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RN7SKP149-201ENST00000363008 344 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RN7SKP115-201ENST00000363177 317 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RNU6-374P-201ENST00000364146 108 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RN7SKP269-201ENST00000365545 319 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RNU6-444P-201ENST00000383988 108 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 MT-TH-201ENST00000387441 69 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 SNORA26.8-201ENST00000391306 124 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 CYCSP45-201ENST00000402289 315 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AL391361.1-201ENST00000405580 489 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 MIR1284-201ENST00000408337 120 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 U3.36-201ENST00000408418 213 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 USP9YP33-201ENST00000412220 421 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA1P49639 AC233981.1-201ENST00000423224 461 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RPL12P34-201ENST00000424532 479 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 AL035407.1-201ENST00000429211 571 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 DLGAP5P1-201ENST00000430307 464 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 USP9YP35-201ENST00000435696 412 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC092013.1-201ENST00000438795 332 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXA1P49639 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 AL360221.1-201ENST00000445989 335 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 MTND4LP3-201ENST00000468320 276 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 SETP11-201ENST00000473027 690 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC079841.1-201ENST00000481228 950 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC013828.1-201ENST00000481845 158 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 RPL30P11-201ENST00000495304 339 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 MTCYBP43-201ENST00000513621 740 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC090151.1-201ENST00000520784 730 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC060788.1-201ENST00000521318 469 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXA1P49639 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA1P49639 SLC2A13P1-201ENST00000531560 322 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 FKBP1BP1-201ENST00000553366 325 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC093249.4-201ENST00000564755 259 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC011487.3-201ENST00000593607 453 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXA1P49639 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXA1P49639 AP001521.1-201ENST00000609150 300 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AL391261.4-201ENST00000616012 481 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AL031667.3-201ENST00000620124 655 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXA1P49639 AC092184.1-201ENST00000625042 715 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 AC026634.1-201ENST00000634369 198 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 ZNRD1ASP-221ENST00000637794 1074 ntBASIC3.81□□□□□ -1.8
HOXA1P49639 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXA1P49639 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms