Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-202P-201ENST00000515998 96 ntBASIC3.55□□□□□ -1.84
SDC1P18827 RN7SKP96-201ENST00000516948 297 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.55□□□□□ -1.84
SDC1P18827 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.55□□□□□ -1.84
SDC1P18827 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.55□□□□□ -1.84
SDC1P18827 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 MIR4458-201ENST00000578872 75 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 AL020997.3-201ENST00000602843 359 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AL163642.2-201ENST00000604722 1019 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AL590392.1-201ENST00000604960 446 ntBASIC3.55□□□□□ -1.84
SDC1P18827 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SDC1P18827 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SDC1P18827 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 XPOTP1-201ENST00000443317 2398 ntBASIC3.55□□□□□ -1.84
SDC1P18827 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SDC1P18827 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.55□□□□□ -1.84
SDC1P18827 AC090229.1-201ENST00000590983 1609 ntBASIC3.55□□□□□ -1.84
SDC1P18827 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SDC1P18827 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.55□□□□□ -1.84
SDC1P18827 FAM91A3P-201ENST00000456826 2544 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL136964.1-201ENST00000622038 2990 ntBASIC3.54□□□□□ -1.84
SDC1P18827 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 AC073073.2-201ENST00000609827 2578 ntBASIC3.54□□□□□ -1.84
SDC1P18827 MIR423-201ENST00000362201 94 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 AC068538.1-201ENST00000376856 336 ntBASIC3.54□□□□□ -1.84
SDC1P18827 RNU6-1151P-201ENST00000384684 107 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC096533.1-201ENST00000411645 353 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 TCEA1P2-201ENST00000420496 906 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL365396.1-201ENST00000430854 671 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC234064.1-201ENST00000436312 247 ntBASIC3.54□□□□□ -1.84
SDC1P18827 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 RNF2P1-201ENST00000442955 1010 ntBASIC3.54□□□□□ -1.84
SDC1P18827 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC009220.1-201ENST00000451614 275 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 UBDP1-202ENST00000457888 382 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 NAP1L1P3-201ENST00000462291 880 ntBASIC3.54□□□□□ -1.84
SDC1P18827 RPL37P6-202ENST00000464216 403 ntBASIC3.54□□□□□ -1.84
SDC1P18827 NIPA2P2-201ENST00000496376 1083 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.54□□□□□ -1.84
SDC1P18827 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 USP9YP5-201ENST00000511770 630 ntBASIC3.54□□□□□ -1.84
SDC1P18827 RN7SKP82-201ENST00000516786 223 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.54□□□□□ -1.84
SDC1P18827 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 OR7E13P-201ENST00000526052 910 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 AC008011.1-201ENST00000545989 227 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 SERPINE4P-201ENST00000554978 281 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.54□□□□□ -1.84
SDC1P18827 AGGF1P8-201ENST00000562979 1000 ntBASIC3.54□□□□□ -1.84
SDC1P18827 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.54□□□□□ -1.84
SDC1P18827 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.54□□□□□ -1.84
SDC1P18827 AC005255.1-201ENST00000593748 216 ntBASIC3.54□□□□□ -1.84
SDC1P18827 VN1R87P-201ENST00000596706 487 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AL359535.1-201ENST00000612100 1087 ntBASIC3.54□□□□□ -1.84
SDC1P18827 AC083809.1-201ENST00000615051 472 ntBASIC3.54□□□□□ -1.84
SDC1P18827 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
SDC1P18827 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.54□□□□□ -1.84
SDC1P18827 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 CEP170P1-201ENST00000502249 4587 ntBASIC3.54□□□□□ -1.84
SDC1P18827 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
SDC1P18827 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SDC1P18827 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.53□□□□□ -1.84
SDC1P18827 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 RNA5SP283-201ENST00000365604 119 ntBASIC3.53□□□□□ -1.84
SDC1P18827 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
SDC1P18827 MIR141-201ENST00000384975 95 ntBASIC3.53□□□□□ -1.84
SDC1P18827 RNU6-1000P-201ENST00000391066 106 ntBASIC3.53□□□□□ -1.84
SDC1P18827 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms