Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ARL2BPP4-201ENST00000506854 471 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 CDC42P4-201ENST00000510507 563 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC116347.2-201ENST00000514912 523 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 RNU6-405P-201ENST00000516637 110 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 MTND1P5-201ENST00000517906 940 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 EIF1P4-201ENST00000572664 335 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC141257.3-201ENST00000572906 215 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 MTND1P15-201ENST00000579262 949 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC093765.1-201ENST00000603758 881 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 BNIP3P11-201ENST00000603878 563 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC107304.1-201ENST00000604229 296 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 Z99129.1-201ENST00000612510 255 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AL731566.2-201ENST00000618971 317 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 TLK1P1-201ENST00000456760 2440 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 AC025574.1-201ENST00000554784 1653 ntBASIC4.98□□□□□ -1.61
TDP1Q9NUW8 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
TDP1Q9NUW8 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 Z95331.1-201ENST00000623075 23112 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 SMG1P6-201ENST00000532337 2930 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL442639.1-201ENST00000625030 1899 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL022393.1-201ENST00000625142 1677 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 RNU6-1215P-201ENST00000384441 102 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL121972.1-201ENST00000402023 252 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 RPL7P30-201ENST00000420888 709 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 RPS27AP7-201ENST00000422792 455 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL645608.4-201ENST00000423619 154 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC092017.2-201ENST00000427600 362 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 PRELID3BP10-201ENST00000431957 584 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC092162.1-201ENST00000432828 434 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC091390.1-201ENST00000433904 331 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 RPL21P133-201ENST00000443666 476 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC012512.1-201ENST00000446594 718 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 TPT1P12-201ENST00000448968 492 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC239809.1-201ENST00000450470 217 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 RPS15AP17-201ENST00000470598 390 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 OR52A4P-201ENST00000472867 958 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL049874.2-201ENST00000492636 288 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 FTH1P24-201ENST00000503502 462 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC114981.1-201ENST00000503897 678 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AF213884.2-201ENST00000510417 903 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC091489.2-201ENST00000566263 604 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 MIR4637-201ENST00000582405 84 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AL359535.1-201ENST00000612100 1087 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC087241.4-201ENST00000612441 480 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC078899.5-201ENST00000612475 178 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 AC008079.2-201ENST00000623543 20396 ntBASIC4.97□□□□□ -1.61
TDP1Q9NUW8 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
TDP1Q9NUW8 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms