Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC090877.1-201ENST00000561418 344 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC096586.1-201ENST00000610267 561 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 AC092184.1-201ENST00000625042 715 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 U6.98-201ENST00000637157 84 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS39Q96JC1 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS39Q96JC1 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 OTUD4P1-201ENST00000237841 3067 ntBASIC3.9□□□□□ -1.79
VPS39Q96JC1 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VPS39Q96JC1 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS39Q96JC1 AL512283.1-201ENST00000606756 1384 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC126755.2-208ENST00000327792 462 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC138969.1-213ENST00000331436 462 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 RPL32P3-201ENST00000359025 275 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 HMGN2P8-201ENST00000391458 268 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 RNU2-71P-201ENST00000411395 189 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 OR8G2P-201ENST00000412796 908 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC008280.1-201ENST00000418851 412 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 C4BPAP2-201ENST00000428434 478 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 MTCO1P43-201ENST00000431831 488 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AL512661.1-201ENST00000434586 1253 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC074367.1-201ENST00000438685 1125 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC098824.1-201ENST00000453565 980 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 RPL21P104-201ENST00000464143 478 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 RPL7P47-201ENST00000497299 556 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 RNA5SP179-201ENST00000517284 121 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 IGKV2D-36-201ENST00000518643 226 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 MRPL49P2-201ENST00000521066 465 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 HIGD1AP5-201ENST00000529959 259 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 CR383656.14-201ENST00000551951 406 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC095057.3-201ENST00000567102 1157 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC015911.5-201ENST00000587076 451 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AL390816.3-201ENST00000604527 1066 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC091167.4-201ENST00000605079 184 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AL158211.2-201ENST00000607282 395 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 RNU4-89P-201ENST00000607443 133 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC112503.2-201ENST00000609005 552 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 MIR378J-201ENST00000611988 109 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 RMST_10.1-201ENST00000616309 154 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AC020978.9-201ENST00000624380 1141 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 MIR6830-201ENST00000636015 70 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 FAM35DP-201ENST00000323387 2712 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
VPS39Q96JC1 AP001350.1-201ENST00000601906 1524 ntBASIC3.89□□□□□ -1.79
VPS39Q96JC1 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS39Q96JC1 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 LINC00561-201ENST00000565815 2738 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC116096.1-201ENST00000566804 2314 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 RNU6-792P-201ENST00000363490 107 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 RNA5SP130-201ENST00000364431 114 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 FABP12P1-201ENST00000401911 322 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AP000567.1-201ENST00000406413 156 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 Y_RNA.625-201ENST00000411256 107 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC007390.1-201ENST00000415722 356 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AL159169.1-201ENST00000421119 127 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 RPL21P66-201ENST00000426566 466 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AL691449.1-201ENST00000426570 421 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC010881.1-201ENST00000433830 235 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 RAB11AP1-201ENST00000442978 646 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 TPT1P12-201ENST00000448968 492 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 Z99714.1-201ENST00000450463 807 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 407 ms