Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.09□□□□□ -1.59
CUX1P39880 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC5.09□□□□□ -1.59
CUX1P39880 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
CUX1P39880 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC5.09□□□□□ -1.59
CUX1P39880 AC024153.1-201ENST00000603103 365 ntBASIC5.09□□□□□ -1.59
CUX1P39880 AC007619.2-201ENST00000605743 379 ntBASIC5.09□□□□□ -1.59
CUX1P39880 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
CUX1P39880 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
CUX1P39880 MAPK10-373ENST00000641983 6772 ntBASIC5.09□□□□□ -1.59
CUX1P39880 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
CUX1P39880 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC5.09□□□□□ -1.6
CUX1P39880 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
CUX1P39880 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC5.08□□□□□ -1.6
CUX1P39880 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.08□□□□□ -1.6
CUX1P39880 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
CUX1P39880 AC034159.1-201ENST00000513885 583 ntBASIC5.08□□□□□ -1.6
CUX1P39880 RFPL4AP3-201ENST00000515267 345 ntBASIC5.08□□□□□ -1.6
CUX1P39880 COX6B1P6-201ENST00000522347 255 ntBASIC5.08□□□□□ -1.6
CUX1P39880 COX6CP8-201ENST00000522620 226 ntBASIC5.08□□□□□ -1.6
CUX1P39880 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.08□□□□□ -1.6
CUX1P39880 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC5.08□□□□□ -1.6
CUX1P39880 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.08□□□□□ -1.6
CUX1P39880 AL359535.1-201ENST00000612100 1087 ntBASIC5.08□□□□□ -1.6
CUX1P39880 RANP4-201ENST00000413361 655 ntBASIC5.07□□□□□ -1.6
CUX1P39880 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.07□□□□□ -1.6
CUX1P39880 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CUX1P39880 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.07□□□□□ -1.6
CUX1P39880 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.07□□□□□ -1.6
CUX1P39880 AC022018.1-201ENST00000430685 241 ntBASIC5.07□□□□□ -1.6
CUX1P39880 AL121890.1-201ENST00000435457 205 ntBASIC5.07□□□□□ -1.6
CUX1P39880 Y_RNA.638-201ENST00000459374 113 ntBASIC5.07□□□□□ -1.6
CUX1P39880 AC083906.5-201ENST00000503722 328 ntBASIC5.07□□□□□ -1.6
CUX1P39880 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC5.07□□□□□ -1.6
CUX1P39880 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.07□□□□□ -1.6
CUX1P39880 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.07□□□□□ -1.6
CUX1P39880 AC015871.2-201ENST00000603605 948 ntBASIC5.07□□□□□ -1.6
CUX1P39880 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CUX1P39880 THAP12P8-201ENST00000447914 2115 ntBASIC5.06□□□□□ -1.6
CUX1P39880 HMGB3P11-201ENST00000440127 604 ntBASIC5.06□□□□□ -1.6
CUX1P39880 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.06□□□□□ -1.6
CUX1P39880 RNU6-237P-201ENST00000515985 71 ntBASIC5.06□□□□□ -1.6
CUX1P39880 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CUX1P39880 AC004832.5-201ENST00000608677 401 ntBASIC5.06□□□□□ -1.6
CUX1P39880 TUG1_1.1-201ENST00000610654 145 ntBASIC5.06□□□□□ -1.6
CUX1P39880 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC5.06□□□□□ -1.6
CUX1P39880 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CUX1P39880 AL136097.1-201ENST00000456945 913 ntBASIC5.05□□□□□ -1.6
CUX1P39880 METTL15P1-201ENST00000481421 1045 ntBASIC5.05□□□□□ -1.6
CUX1P39880 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC5.05□□□□□ -1.6
CUX1P39880 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC5.05□□□□□ -1.6
CUX1P39880 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.05□□□□□ -1.6
CUX1P39880 AC103783.1-201ENST00000520506 373 ntBASIC5.05□□□□□ -1.6
CUX1P39880 AC067852.4-201ENST00000590314 478 ntBASIC5.05□□□□□ -1.6
CUX1P39880 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
CUX1P39880 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CUX1P39880 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CUX1P39880 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CUX1P39880 OFD1P6Y-202ENST00000451061 2724 ntBASIC5.04□□□□□ -1.6
CUX1P39880 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC5.04□□□□□ -1.6
CUX1P39880 LAP3P1-201ENST00000403648 294 ntBASIC5.04□□□□□ -1.6
CUX1P39880 AC019097.1-201ENST00000424783 735 ntBASIC5.04□□□□□ -1.6
CUX1P39880 DUTP6-201ENST00000425573 462 ntBASIC5.04□□□□□ -1.6
CUX1P39880 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC5.04□□□□□ -1.6
CUX1P39880 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.04□□□□□ -1.6
CUX1P39880 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.04□□□□□ -1.6
CUX1P39880 AC093755.1-201ENST00000512950 1023 ntBASIC5.04□□□□□ -1.6
CUX1P39880 RFPL4AP5-201ENST00000514977 504 ntBASIC5.04□□□□□ -1.6
CUX1P39880 OR5G4P-201ENST00000525251 760 ntBASIC5.04□□□□□ -1.6
CUX1P39880 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CUX1P39880 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.04□□□□□ -1.6
CUX1P39880 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.04□□□□□ -1.6
CUX1P39880 HMGN2P47-201ENST00000559378 272 ntBASIC5.04□□□□□ -1.6
CUX1P39880 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC5.04□□□□□ -1.6
CUX1P39880 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.04□□□□□ -1.6
CUX1P39880 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CUX1P39880 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CUX1P39880 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CUX1P39880 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CUX1P39880 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CUX1P39880 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CUX1P39880 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CUX1P39880 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.03□□□□□ -1.6
CUX1P39880 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.03□□□□□ -1.6
CUX1P39880 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.03□□□□□ -1.6
CUX1P39880 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CUX1P39880 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
CUX1P39880 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CUX1P39880 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CUX1P39880 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CUX1P39880 NACAP7-201ENST00000407371 609 ntBASIC5.02□□□□□ -1.61
CUX1P39880 RNA5SP31-201ENST00000411144 127 ntBASIC5.02□□□□□ -1.61
CUX1P39880 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC5.02□□□□□ -1.61
CUX1P39880 ARL2BPP6-201ENST00000512757 439 ntBASIC5.02□□□□□ -1.61
CUX1P39880 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.02□□□□□ -1.61
CUX1P39880 RNU1-41P-201ENST00000516161 162 ntBASIC5.02□□□□□ -1.61
CUX1P39880 RNU1-48P-201ENST00000516400 162 ntBASIC5.02□□□□□ -1.61
CUX1P39880 RPL23AP92-201ENST00000603609 255 ntBASIC5.02□□□□□ -1.61
CUX1P39880 AC091903.1-201ENST00000624322 454 ntBASIC5.02□□□□□ -1.61
CUX1P39880 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC5.02□□□□□ -1.61
CUX1P39880 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms