Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNU6-252P-201ENST00000363232 107 ntBASIC3.23□□□□□ -1.89
USF1P22415 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
USF1P22415 U1.1-201ENST00000384101 164 ntBASIC3.23□□□□□ -1.89
USF1P22415 MIR34B-201ENST00000385076 84 ntBASIC3.23□□□□□ -1.89
USF1P22415 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
USF1P22415 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.23□□□□□ -1.89
USF1P22415 KRR1P1-201ENST00000419430 803 ntBASIC3.23□□□□□ -1.89
USF1P22415 ARL2BPP3-201ENST00000421226 480 ntBASIC3.23□□□□□ -1.89
USF1P22415 HMGN2P31-201ENST00000432430 273 ntBASIC3.23□□□□□ -1.89
USF1P22415 KCTD9P3-201ENST00000434597 1169 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC007000.2-201ENST00000442564 487 ntBASIC3.23□□□□□ -1.89
USF1P22415 RPS3AP12-201ENST00000443616 753 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.23□□□□□ -1.89
USF1P22415 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
USF1P22415 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 AL133162.1-201ENST00000463228 453 ntBASIC3.23□□□□□ -1.89
USF1P22415 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.23□□□□□ -1.89
USF1P22415 TRAV31-201ENST00000502780 342 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.23□□□□□ -1.89
USF1P22415 PTGES3P3-201ENST00000511479 482 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC103833.1-201ENST00000517442 172 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.23□□□□□ -1.89
USF1P22415 AC010306.1-201ENST00000523223 1117 ntBASIC3.23□□□□□ -1.89
USF1P22415 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USF1P22415 MTND5P21-201ENST00000531961 522 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.23□□□□□ -1.89
USF1P22415 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.23□□□□□ -1.89
USF1P22415 AC093014.1-201ENST00000548926 724 ntBASIC3.23□□□□□ -1.89
USF1P22415 CCNG2P1-201ENST00000549521 1000 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC025918.2-201ENST00000558683 763 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.23□□□□□ -1.89
USF1P22415 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.23□□□□□ -1.89
USF1P22415 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.23□□□□□ -1.89
USF1P22415 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.23□□□□□ -1.89
USF1P22415 AC017100.2-201ENST00000584628 355 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.23□□□□□ -1.89
USF1P22415 U3.45-201ENST00000607547 219 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC112503.1-201ENST00000608436 391 ntBASIC3.23□□□□□ -1.89
USF1P22415 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.23□□□□□ -1.89
USF1P22415 AL359535.1-201ENST00000612100 1087 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC073530.2-201ENST00000623987 261 ntBASIC3.23□□□□□ -1.89
USF1P22415 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
USF1P22415 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
USF1P22415 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
USF1P22415 AC093908.1-201ENST00000623125 8092 ntBASIC3.22□□□□□ -1.89
USF1P22415 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
USF1P22415 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
USF1P22415 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
USF1P22415 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
USF1P22415 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USF1P22415 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
USF1P22415 RNA5SP72-201ENST00000364442 117 ntBASIC3.22□□□□□ -1.89
USF1P22415 RNU6-1293P-201ENST00000384077 107 ntBASIC3.22□□□□□ -1.89
USF1P22415 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.22□□□□□ -1.89
USF1P22415 TATDN1P1-201ENST00000414123 891 ntBASIC3.22□□□□□ -1.89
USF1P22415 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 RPS15AP40-201ENST00000419621 391 ntBASIC3.22□□□□□ -1.89
USF1P22415 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.22□□□□□ -1.89
USF1P22415 HSPD1P21-201ENST00000436541 245 ntBASIC3.22□□□□□ -1.89
USF1P22415 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 RANP8-201ENST00000444720 713 ntBASIC3.22□□□□□ -1.89
USF1P22415 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.22□□□□□ -1.89
USF1P22415 MTND2P6-201ENST00000455337 1030 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC126121.1-201ENST00000482313 553 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 AP001086.1-201ENST00000494882 321 ntBASIC3.22□□□□□ -1.89
USF1P22415 RPL7P47-201ENST00000497299 556 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC110768.1-201ENST00000509222 400 ntBASIC3.22□□□□□ -1.89
USF1P22415 RPL7L1P13-201ENST00000511702 739 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC026726.1-201ENST00000512859 601 ntBASIC3.22□□□□□ -1.89
USF1P22415 RN7SKP18-201ENST00000516005 275 ntBASIC3.22□□□□□ -1.89
USF1P22415 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.22□□□□□ -1.89
USF1P22415 C1DP5-201ENST00000525775 383 ntBASIC3.22□□□□□ -1.89
USF1P22415 MTND2P26-201ENST00000528255 1029 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
USF1P22415 OR8L1P-201ENST00000534005 955 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC3.22□□□□□ -1.89
USF1P22415 MIR5047-201ENST00000579212 100 ntBASIC3.22□□□□□ -1.89
USF1P22415 RN7SL339P-201ENST00000580597 296 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC090312.2-201ENST00000582687 378 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC007179.3-201ENST00000604976 235 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC092354.2-201ENST00000607786 514 ntBASIC3.22□□□□□ -1.89
USF1P22415 AL159169.3-201ENST00000608871 561 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC022079.2-201ENST00000619739 566 ntBASIC3.22□□□□□ -1.89
USF1P22415 AC015967.1-201ENST00000619893 476 ntBASIC3.22□□□□□ -1.89
USF1P22415 RNU6-156P-201ENST00000621869 107 ntBASIC3.22□□□□□ -1.89
USF1P22415 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.22□□□□□ -1.89
USF1P22415 MIR4496-201ENST00000635896 61 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms