Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Y_RNA.422-201ENST00000384054 114 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RNU6-574P-201ENST00000384265 107 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 MIR142-201ENST00000384835 87 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AL031985.1-201ENST00000392713 418 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 DBIP1-201ENST00000401435 260 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 HMGB3P18-201ENST00000406327 590 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 FTLP19-201ENST00000433300 394 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 GSTM5P1-201ENST00000434751 660 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC097499.1-201ENST00000444277 208 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AL513533.1-201ENST00000453728 415 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RPL5P22-201ENST00000480199 884 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RPS24P16-201ENST00000497294 392 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 HMGB3P16-201ENST00000508037 287 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 BTG4P1-201ENST00000510421 183 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RNU6-794P-201ENST00000517261 64 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC105029.1-201ENST00000520250 669 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC011611.1-201ENST00000552179 197 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC005341.1-201ENST00000571086 708 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC233702.9-201ENST00000581528 203 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 RN7SL356P-201ENST00000582228 248 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC022916.3-201ENST00000592961 742 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC009027.1-201ENST00000604510 479 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 MIR1302-1-201ENST00000637932 143 ntBASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC39Q9UFE4 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 SPATA2P1-201ENST00000431223 2055 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 MT-TP-201ENST00000387461 68 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 Y_RNA.598-201ENST00000410480 95 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 HMGB3P20-201ENST00000417997 600 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 B3GALNT1P1-201ENST00000420569 975 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 RPS27AP14-201ENST00000422868 454 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 SRSF1P1-201ENST00000424058 520 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 RPL23AP4-201ENST00000427757 463 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 RPS29P14-201ENST00000431518 171 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 RPS20P20-201ENST00000460498 340 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC074386.1-201ENST00000476560 767 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 PPIAP19-201ENST00000486414 492 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 CCDC34P1-201ENST00000507441 517 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC104108.1-201ENST00000509930 412 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC026412.2-201ENST00000512270 1075 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 RN7SKP13-201ENST00000515933 244 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 OR4A45P-201ENST00000529954 901 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 HIF1AP1-201ENST00000553642 175 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC022404.1-201ENST00000555320 273 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 NIFKP8-201ENST00000560500 874 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC008737.2-201ENST00000599446 118 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC007687.1-201ENST00000602704 304 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AL136363.1-201ENST00000605349 337 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC093788.1-201ENST00000609356 927 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC015914.2-201ENST00000618167 288 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 BX005214.3-202ENST00000619809 325 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 MIR6839-201ENST00000620425 113 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC116563.2-201ENST00000624751 535 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC134503.1-201ENST00000633048 54 ntBASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
CCDC39Q9UFE4 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms