Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TRAV37-201ENST00000553906 342 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 AC243654.2-201ENST00000612843 443 ntBASIC3.55□□□□□ -1.84
CCDC42Q96M95 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC42Q96M95 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
CCDC42Q96M95 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 DCAF13P1-201ENST00000495256 1330 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC007899.1-201ENST00000412776 775 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 CASKP1-201ENST00000412870 582 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL138799.3-201ENST00000438968 350 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC104619.4-201ENST00000510773 249 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC010265.1-201ENST00000513509 211 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AP001207.2-201ENST00000519490 539 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC005476.1-201ENST00000554427 397 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC091903.1-201ENST00000624322 454 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC107081.3-201ENST00000612715 2034 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC42Q96M95 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC42Q96M95 HSPA8P19-201ENST00000505359 1517 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL079305.1-201ENST00000623159 3008 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 AL356274.2-201ENST00000624379 3752 ntBASIC3.54□□□□□ -1.84
CCDC42Q96M95 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC42Q96M95 AC096656.1-201ENST00000623826 1364 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC42Q96M95 RNU1-70P-201ENST00000362618 164 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 MTCO1P52-201ENST00000433928 531 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 UBE2V2P1-201ENST00000434717 398 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 RBMY2UP-201ENST00000453474 324 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 AC091959.2-201ENST00000477363 321 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 ACTR3P3-201ENST00000480448 893 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 MTCO1P30-201ENST00000515244 580 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 AC245166.1-201ENST00000521012 253 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 GTF2IP22-201ENST00000554443 182 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 AC006270.2-201ENST00000578523 652 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 AL591516.1-201ENST00000611326 274 ntBASIC3.53□□□□□ -1.84
CCDC42Q96M95 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC42Q96M95 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CCDC42Q96M95 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC42Q96M95 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC42Q96M95 RNU4-35P-201ENST00000362588 141 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 RN7SKP227-201ENST00000364445 330 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 SNORA48.8-201ENST00000391324 134 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 RN7SKP263-201ENST00000411194 309 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC013404.1-201ENST00000413068 249 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC073063.1-201ENST00000434352 607 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 H2AFZP6-201ENST00000444403 394 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 ST13P14-201ENST00000474095 734 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 OR5H4P-201ENST00000510851 923 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 RNU1-95P-201ENST00000516357 160 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 RNU1-128P-201ENST00000516704 160 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 OR4H12P-201ENST00000556269 907 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
CCDC42Q96M95 AC009093.8-201ENST00000641769 292 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 MTND5P27-201ENST00000428871 1720 ntBASIC3.52□□□□□ -1.85
CCDC42Q96M95 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms