Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC087385.1-201ENST00000475062 312 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AP002812.1-201ENST00000495378 474 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC021678.1-201ENST00000505195 936 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 TXNP6-201ENST00000510190 310 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 APOOP4-201ENST00000513530 597 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 RNU1-45P-201ENST00000517191 141 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 SEC11B-201ENST00000518383 499 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA1P55317 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA1P55317 MIR4444-1-201ENST00000581696 74 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA1P55317 MIR4444-2-201ENST00000584390 74 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.15□□□□□ -1.91
FOXA1P55317 AC091903.1-201ENST00000624322 454 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 AC244258.1-201ENST00000637553 1071 ntBASIC3.15□□□□□ -1.91
FOXA1P55317 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA1P55317 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC114546.3-201ENST00000623582 1734 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.14□□□□□ -1.91
FOXA1P55317 OR6K3-202ENST00000368146 996 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
FOXA1P55317 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 MIR490-201ENST00000384865 128 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 MIR218-2-201ENST00000385006 110 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 AL034403.1-201ENST00000399414 885 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA1P55317 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 RPL23AP4-201ENST00000427757 463 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 AC018644.1-201ENST00000429934 551 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
FOXA1P55317 AL133547.1-201ENST00000448546 220 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 RPL31P20-201ENST00000449593 360 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 RPS27P29-201ENST00000463110 252 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA1P55317 RNA5SP217-201ENST00000515959 91 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 RNA5SP309-201ENST00000516670 106 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 AC026403.1-201ENST00000518938 295 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 TRAV11-201ENST00000539512 339 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 EIF1AXP2-201ENST00000555940 413 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA1P55317 CCDC58P3-201ENST00000590792 430 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC004943.3-201ENST00000624116 600 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA1P55317 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA1P55317 AC087565.3-202ENST00000642085 1603 ntBASIC3.14□□□□□ -1.91
FOXA1P55317 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA1P55317 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.13□□□□□ -1.91
FOXA1P55317 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 RNU6-670P-201ENST00000364312 104 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 U3.11-201ENST00000364476 212 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 RNU6-1251P-201ENST00000364502 107 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 SNORA62.3-201ENST00000365110 153 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 MT-TP-201ENST00000387461 68 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 MIR670-201ENST00000390142 98 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 HMGB3P23-201ENST00000414981 585 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC063979.1-201ENST00000415539 377 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA1P55317 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA1P55317 AC091286.1-201ENST00000431233 461 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 ARL4AP4-201ENST00000434170 518 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 B3GNT2P1-201ENST00000434960 952 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA1P55317 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA1P55317 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA1P55317 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA1P55317 HMGN2P7-201ENST00000456186 273 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 RN7SL330P-201ENST00000469709 307 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 IGKV2-23-201ENST00000518729 323 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXA1P55317 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA1P55317 PDCL2P2-201ENST00000533651 189 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 RPL21P12-201ENST00000559810 515 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC037471.2-201ENST00000564941 598 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC018552.3-201ENST00000567416 561 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms