Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 NEAT1-202ENST00000501122 22743 ntBASIC3.9□□□□□ -1.79
TNFRSF4P43489 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
TNFRSF4P43489 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
TNFRSF4P43489 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
TNFRSF4P43489 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.9□□□□□ -1.79
TNFRSF4P43489 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AL136964.1-201ENST00000622038 2990 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC007066.1-201ENST00000392902 381 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 RPS15AP40-201ENST00000419621 391 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 SETD6P1-201ENST00000444575 317 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 RPL37P6-202ENST00000464216 403 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 RPL21P18-201ENST00000469899 480 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC106707.2-201ENST00000484182 374 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 RPS27P23-201ENST00000487608 251 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 NAMPTP2-201ENST00000505629 1115 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC022695.1-201ENST00000522089 237 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 OR5M7P-201ENST00000526140 972 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 CYP2C60P-201ENST00000566088 139 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC233702.9-201ENST00000581528 203 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC008687.2-201ENST00000597865 520 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC009948.4-201ENST00000604692 675 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC144521.1-201ENST00000607148 956 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC105429.2-201ENST00000610567 517 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AL591424.2-201ENST00000617023 128 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC055839.1-201ENST00000634467 498 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.89□□□□□ -1.79
TNFRSF4P43489 FAM157B-203ENST00000639350 358 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AL596275.2-204ENST00000641628 552 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AL596275.2-206ENST00000641957 626 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
TNFRSF4P43489 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
TNFRSF4P43489 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
TNFRSF4P43489 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
TNFRSF4P43489 MTND4P8-201ENST00000514997 1362 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC025263.3-201ENST00000622965 1396 ntBASIC3.89□□□□□ -1.79
TNFRSF4P43489 AC107081.3-201ENST00000612715 2034 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 Y_RNA.333-201ENST00000365274 102 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 U3.15-201ENST00000365398 212 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 SNORD3H-201ENST00000384486 214 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AL355143.1-201ENST00000407101 841 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 RNU2-21P-201ENST00000410368 188 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AL009174.1-201ENST00000426577 416 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 RNF2P1-201ENST00000442955 1010 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 NDUFS5P3-201ENST00000450668 321 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 PRSS3P4-201ENST00000453323 162 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC108941.1-201ENST00000502853 530 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 RN7SKP18-201ENST00000516005 275 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 RN7SKP234-201ENST00000517173 224 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 IGKV2D-19-201ENST00000523346 262 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC068339.2-201ENST00000534395 618 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 GNRHR2P1-201ENST00000555315 631 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 BNIP3P31-201ENST00000604515 566 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 RNU1-30P-201ENST00000606575 163 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC092354.2-201ENST00000607786 514 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AL354760.1-201ENST00000608357 643 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 OR6R2P-201ENST00000609216 300 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC012314.7-201ENST00000619693 93 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 AC015967.1-201ENST00000619893 476 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms