Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 U73479.1-201ENST00000618062 168 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 AC022960.3-201ENST00000619794 441 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS28Q9UK41 AL359893.1-201ENST00000447628 1580 ntBASIC4.44□□□□□ -1.7
VPS28Q9UK41 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
VPS28Q9UK41 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC018529.3-201ENST00000624212 2254 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 ZNF734P-201ENST00000419494 1534 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC067945.1-201ENST00000342609 618 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 RNU1-132P-201ENST00000364300 164 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 RNA5SP366-201ENST00000365454 123 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC068538.1-201ENST00000376856 336 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 SNORD116-12-201ENST00000384468 92 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AL583835.1-201ENST00000399570 407 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 RN7SKP177-201ENST00000410567 355 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AL133384.1-201ENST00000412744 351 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 NRBF2P2-201ENST00000413087 861 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 MTCYBP24-201ENST00000420387 1106 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 RPEP2-201ENST00000432149 701 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC104073.1-201ENST00000451988 151 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 PNPLA4P1-201ENST00000458328 305 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 UQCRHP4-201ENST00000471686 272 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 RPL35P6-201ENST00000490024 372 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC084024.2-201ENST00000503480 791 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 UBE2V1P12-201ENST00000503954 474 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 Vault.1-201ENST00000516474 102 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 SNORA48.10-201ENST00000516965 160 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AP001189.2-201ENST00000527320 189 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 TRAV8-5-201ENST00000537369 341 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 TVP23BP1-201ENST00000557500 617 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC005412.1-201ENST00000580812 1049 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC069366.1-201ENST00000583159 838 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 MIR3138-201ENST00000585238 82 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC008638.3-201ENST00000603341 463 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AL139395.1-201ENST00000603662 160 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AL354984.3-201ENST00000604803 325 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 MIR6716-201ENST00000613413 80 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 AL121895.2-201ENST00000619558 447 ntBASIC4.43□□□□□ -1.7
VPS28Q9UK41 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
VPS28Q9UK41 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS28Q9UK41 PNPT1P2-201ENST00000456768 2050 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 MTND4P26-201ENST00000415971 1359 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC097504.1-201ENST00000515103 2415 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 RN7SKP44-201ENST00000363602 316 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 snoZ40.1-201ENST00000364540 72 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC106883.1-201ENST00000418805 562 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 MFSD13B-201ENST00000420133 1290 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC007435.1-201ENST00000421086 415 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC092832.1-201ENST00000422934 400 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 EIF1P3-201ENST00000423841 334 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 USP12PY-201ENST00000427677 1064 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 RPS27AP12-201ENST00000429552 465 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC091390.1-201ENST00000433904 331 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS28Q9UK41 HLA-N-201ENST00000437516 135 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 USP9YP22-201ENST00000438971 294 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC093155.1-201ENST00000440164 826 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 MTCO1P14-201ENST00000441695 1559 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AL512326.1-201ENST00000443050 721 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 NUTF2P3-201ENST00000448540 384 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 RPL7P22-201ENST00000466005 733 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS28Q9UK41 AP000926.1-201ENST00000479573 241 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 AC041039.1-201ENST00000485656 536 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 KLRA1P-201ENST00000503499 986 ntBASIC4.42□□□□□ -1.7
VPS28Q9UK41 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms