Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 RWDD4P2-201ENST00000426392 563 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 ATP5HP2-201ENST00000433885 485 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 NOTCH2P1-201ENST00000443481 624 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 CDC27P1-201ENST00000445384 715 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC104306.1-201ENST00000449702 371 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC104629.1-201ENST00000494226 508 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 NAMPTP2-201ENST00000505629 1115 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 RNU1-45P-201ENST00000517191 141 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 IGJP1-201ENST00000522682 475 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AF279873.1-201ENST00000523393 313 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC034105.4-201ENST00000568304 277 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AP003117.2-201ENST00000606010 545 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AL354760.1-201ENST00000608357 643 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AP002371.2-201ENST00000624450 503 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 DCAF13P3-201ENST00000561147 1334 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 AC024560.2-201ENST00000507981 1497 ntBASIC3.83□□□□□ -1.8
LHX3Q9UBR4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
LHX3Q9UBR4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC138393.1-206ENST00000540997 1886 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 KPNA2P2-201ENST00000419546 1489 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC025263.3-201ENST00000622965 1396 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 HLFP1-201ENST00000402375 499 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 RNU2-21P-201ENST00000410368 188 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC004552.1-201ENST00000419089 348 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC044797.1-201ENST00000445744 679 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AL500522.2-201ENST00000448562 343 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 CDC42P1-201ENST00000456658 548 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 RPL21P18-201ENST00000469899 480 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 RPS26P3-201ENST00000470205 348 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC090543.2-201ENST00000483963 348 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC004057.1-201ENST00000485827 348 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 TRBV12-2-201ENST00000489763 344 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC020593.1-201ENST00000507399 299 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC109458.1-201ENST00000508858 316 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 MIR3908-201ENST00000579798 126 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AP001180.3-201ENST00000582221 145 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 RNU1-30P-201ENST00000606575 163 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AL121772.2-201ENST00000614331 297 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 AC039056.2-201ENST00000622261 511 ntBASIC3.82□□□□□ -1.8
LHX3Q9UBR4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
LHX3Q9UBR4 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 MTND4P8-201ENST00000514997 1362 ntBASIC3.81□□□□□ -1.8
LHX3Q9UBR4 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LHX3Q9UBR4 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms