Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FTH1P1-201ENST00000437933 532 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 PDLIM1P4-201ENST00000504327 1006 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 RNA5SP341-201ENST00000516261 117 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC125494.3-201ENST00000602759 455 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC244258.1-201ENST00000637553 1071 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 RPL23AP57-201ENST00000332361 466 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 ERMN-204ENST00000409925 556 ntTSL 4 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC023598.1-201ENST00000472521 361 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC055855.1-201ENST00000489563 579 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 OR9N1P-201ENST00000491296 333 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 OR5AP1P-201ENST00000529730 940 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC020914.4-201ENST00000597690 277 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC015849.2-201ENST00000605738 409 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 XGY1-201ENST00000381172 446 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 RPL6P21-201ENST00000418672 846 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AL671855.1-201ENST00000446875 1203 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 OR4C2P-201ENST00000530855 1064 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC006946.3-201ENST00000609791 756 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AL669942.2-201ENST00000620352 697 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AL353743.1-202ENST00000431724 1695 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AC245100.2-201ENST00000454544 1679 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
SYNE1Q8NF91 SKP1P1-201ENST00000438081 489 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 AP001992.1-205ENST00000462248 379 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 Y_RNA.676-201ENST00000516393 96 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 RNA5SP164-201ENST00000516533 110 ntBASIC1.03□□□□□ -2.24
SYNE1Q8NF91 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 AC011825.1-201ENST00000484967 388 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 RNU1-143P-201ENST00000516296 146 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 DEFB109D-201ENST00000529497 240 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 VN1R78P-201ENST00000597393 564 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 OR6R2P-201ENST00000609216 300 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 U1.23-201ENST00000610293 146 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 RNU1-68P-201ENST00000615382 146 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 U1.39-201ENST00000621562 146 ntBASIC1.03□□□□□ -2.25
SYNE1Q8NF91 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC1.03□□□□□ -2.25
SYNE1Q8NF91 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 SPATA2P1-201ENST00000431223 2055 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ZNF826P-207ENST00000622273 1910 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 OR10J6P-201ENST00000289731 930 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RNA5SP322-201ENST00000363617 119 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 TRBV24OR9-2-201ENST00000416632 435 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ATP5C1P1-201ENST00000441945 895 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC092045.1-201ENST00000495716 1231 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 BMS1P21-201ENST00000634565 365 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AL118496.1-201ENST00000440201 1812 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 NCAPGP1-201ENST00000505112 1814 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RMST-202ENST00000541282 2099 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AP002088.1-201ENST00000382740 395 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC073508.1-201ENST00000428866 656 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 RPS29P31-201ENST00000446147 164 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 AC009812.2-201ENST00000517657 457 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ACTR3BP1-201ENST00000605584 1247 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 MIR486-1-201ENST00000612171 68 ntBASIC1.02□□□□□ -2.25
SYNE1Q8NF91 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC1.02□□□□□ -2.25
SYNE1Q8NF91 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms