Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CD24P4-201ENST00000382840 243 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 SNORD21-201ENST00000383953 95 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 MIR144-201ENST00000384886 86 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 ENSAP1-201ENST00000392855 326 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 ANAPC10P1-201ENST00000395991 556 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 EIF4EBP2P3-201ENST00000403144 334 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 METTL5-204ENST00000409340 472 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC109780.2-201ENST00000413467 845 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 EI24P1-201ENST00000416584 867 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AL445528.1-201ENST00000426330 420 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 RPL23AP4-201ENST00000427757 463 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 ST13P20-201ENST00000447996 1065 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 CYCSP35-201ENST00000451978 304 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 RPL12P20-201ENST00000475538 479 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 RPL7P16-201ENST00000479738 738 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC106872.4-201ENST00000510050 523 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 SNORA31.11-201ENST00000516528 139 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 SCARNA13-201ENST00000516672 275 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 RN7SKP82-201ENST00000516786 223 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC010476.1-201ENST00000519111 851 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AP002404.1-201ENST00000532005 451 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AP004607.5-201ENST00000532034 217 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 NANOGNBP2-201ENST00000544753 553 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC067852.3-201ENST00000589177 561 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 DLEU2_6.1-201ENST00000610536 112 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AL161637.1-201ENST00000622380 412 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 MIR6834-201ENST00000622807 81 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 AC073592.6-201ENST00000624271 415 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 THUMPD3P1-201ENST00000506556 1480 ntBASIC1.92□□□□□ -2.1
LINC00643Q86TS7 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC1.92□□□□□ -2.1
LINC00643Q86TS7 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AL512283.1-201ENST00000606756 1384 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RN7SKP149-201ENST00000363008 344 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RNU6-356P-201ENST00000384140 107 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AL161909.1-201ENST00000397390 712 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 MIR1286-201ENST00000408112 78 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RNA5SP181-201ENST00000410246 98 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 NF1P3-201ENST00000457709 450 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RPL23AP12-201ENST00000467573 473 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RPS17P11-201ENST00000474297 293 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 KC877373.1-201ENST00000479066 408 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC110792.1-201ENST00000491826 472 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RN7SKP70-201ENST00000516655 271 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RNU4-60P-201ENST00000517239 135 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 OR4R1P-201ENST00000529879 463 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RN7SL371P-201ENST00000578099 267 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC008687.2-201ENST00000597865 520 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 RPL23AP78-201ENST00000599928 470 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AL031985.2-201ENST00000600955 480 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC019159.1-201ENST00000605094 187 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 GMCL1P2-201ENST00000605230 823 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC011890.2-201ENST00000613393 294 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 NAA60-237ENST00000615865 326 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC140725.3-201ENST00000616193 880 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC026124.2-201ENST00000621847 656 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AF117829.1-206ENST00000621883 3802 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 KDM5DP1-201ENST00000622542 298 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AC002044.3-201ENST00000623314 541 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 MTND5P3-201ENST00000438536 1800 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 ANKRD62P1-201ENST00000434304 1623 ntBASIC1.91□□□□□ -2.1
LINC00643Q86TS7 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LINC00643Q86TS7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
LINC00643Q86TS7 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.9□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms