Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC011472.4-201ENST00000615848 491 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC002553.4-201ENST00000616896 331 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AL356274.1-201ENST00000617064 410 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 AC112204.3-201ENST00000623822 332 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USP39Q53GS9 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USP39Q53GS9 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.15□□□□□ -1.59
USP39Q53GS9 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.15□□□□□ -1.59
USP39Q53GS9 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.15□□□□□ -1.59
USP39Q53GS9 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.15□□□□□ -1.59
USP39Q53GS9 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USP39Q53GS9 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.15□□□□□ -1.59
USP39Q53GS9 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.14□□□□□ -1.59
USP39Q53GS9 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 RNU4-44P-201ENST00000363050 141 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 Y_RNA.302-201ENST00000364997 102 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 RN7SKP153-201ENST00000365026 316 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 RNU2-65P-201ENST00000410162 185 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 COX5BP7-201ENST00000414780 274 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.14□□□□□ -1.59
USP39Q53GS9 NPM1P24-201ENST00000428039 894 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 MTCO1P54-201ENST00000430139 712 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC068287.1-201ENST00000430283 295 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 RPS25P9-201ENST00000435591 252 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 RHOT1P3-201ENST00000436571 331 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC073614.1-201ENST00000438690 650 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 RPL34P20-201ENST00000442771 351 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 RPL7P36-201ENST00000444633 681 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 GAPDHP14-201ENST00000450472 937 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 PRPF38AP1-201ENST00000451976 933 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.14□□□□□ -1.59
USP39Q53GS9 AL513533.1-201ENST00000453728 415 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 AC096741.1-201ENST00000472250 846 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 RPS4XP15-201ENST00000489210 795 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 STMN1P2-201ENST00000508435 439 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC138832.1-201ENST00000522871 556 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.14□□□□□ -1.59
USP39Q53GS9 AL359219.2-201ENST00000555184 348 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.14□□□□□ -1.59
USP39Q53GS9 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC5.14□□□□□ -1.59
USP39Q53GS9 MTCO3P13-201ENST00000577757 781 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.14□□□□□ -1.59
USP39Q53GS9 BPTFP1-201ENST00000579209 492 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.14□□□□□ -1.59
USP39Q53GS9 AC011453.2-201ENST00000603737 729 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 AC024560.3-201ENST00000608482 349 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 AL136221.1-201ENST00000621449 509 ntBASIC5.14□□□□□ -1.59
USP39Q53GS9 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.14□□□□□ -1.59
USP39Q53GS9 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USP39Q53GS9 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.14□□□□□ -1.59
USP39Q53GS9 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.14□□□□□ -1.59
USP39Q53GS9 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 AL034549.2-201ENST00000618285 3373 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 CR383658.2-201ENST00000547576 1525 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 A2MP1-204ENST00000566278 4130 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
USP39Q53GS9 ENSAP3-201ENST00000312710 333 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC079741.1-201ENST00000321498 212 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USP39Q53GS9 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 RNU6-178P-201ENST00000384631 104 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AL356967.1-201ENST00000406305 431 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 CCNG1P1-201ENST00000406783 885 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.13□□□□□ -1.59
USP39Q53GS9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.13□□□□□ -1.59
USP39Q53GS9 RPL23AP4-201ENST00000427757 463 ntBASIC5.13□□□□□ -1.59
USP39Q53GS9 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.13□□□□□ -1.59
USP39Q53GS9 VDAC1P6-201ENST00000430062 855 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms