Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL353796.1-201ENST00000561542 3241 ntBASIC5.9□□□□□ -1.47
SOX4Q06945 NUP58P1-201ENST00000502546 1738 ntBASIC5.9□□□□□ -1.47
SOX4Q06945 MTND5P1-201ENST00000445440 1375 ntBASIC5.9□□□□□ -1.47
SOX4Q06945 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SOX4Q06945 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SOX4Q06945 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 OR4F13P-202ENST00000560066 2054 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SOX4Q06945 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 Y_RNA.46-201ENST00000362695 102 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 Y_RNA.184-201ENST00000363884 108 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX4Q06945 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SOX4Q06945 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 AP000534.2-201ENST00000412729 568 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 METTL15P3-201ENST00000415522 1221 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AL161631.1-201ENST00000417933 486 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC108059.2-201ENST00000434626 151 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 RPS3AP54-201ENST00000435535 734 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 AL672138.1-201ENST00000450604 1015 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 HIGD1AP8-201ENST00000453927 274 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 RPL23AP71-201ENST00000470966 469 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX4Q06945 RPSAP51-201ENST00000497462 645 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 HIGD1AP14-201ENST00000507617 282 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 PCBP2P3-201ENST00000509726 843 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.89□□□□□ -1.47
SOX4Q06945 GAPDHP62-201ENST00000515313 990 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.89□□□□□ -1.47
SOX4Q06945 COX6B1P6-201ENST00000522347 255 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 OR5M2P-201ENST00000529003 936 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 AC051619.2-201ENST00000559063 397 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 MIR5186-201ENST00000577504 120 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC010525.2-201ENST00000590920 195 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
SOX4Q06945 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 AC104237.2-201ENST00000612456 443 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC078899.5-201ENST00000612475 178 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AL122125.1-201ENST00000616999 600 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC109583.2-201ENST00000617367 129 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 AC090617.10-201ENST00000624308 134 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
SOX4Q06945 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 MTND4P35-201ENST00000604257 1375 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 AP002907.1-201ENST00000606361 1430 ntBASIC5.89□□□□□ -1.47
SOX4Q06945 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.89□□□□□ -1.47
SOX4Q06945 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SOX4Q06945 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
SOX4Q06945 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SOX4Q06945 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX4Q06945 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SOX4Q06945 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SOX4Q06945 Y_RNA.387-201ENST00000383918 102 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 Y_RNA.459-201ENST00000384251 102 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 Y_RNA.579-201ENST00000390939 94 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
SOX4Q06945 AC009161.1-201ENST00000417306 376 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX4Q06945 AC018630.2-202ENST00000422992 927 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AL590399.2-201ENST00000427536 309 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 ATP5JP1-201ENST00000431631 322 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.88□□□□□ -1.47
SOX4Q06945 AL627308.1-201ENST00000435693 821 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.88□□□□□ -1.47
SOX4Q06945 HMGB1P18-201ENST00000438801 619 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX4Q06945 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.88□□□□□ -1.47
SOX4Q06945 AC005532.2-201ENST00000467154 373 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SOX4Q06945 AC072052.1-201ENST00000496556 306 ntBASIC5.88□□□□□ -1.47
SOX4Q06945 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms