Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.59□□□□□ -1.84
COL4A4P53420 AL139132.1-201ENST00000431587 344 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.59□□□□□ -1.84
COL4A4P53420 AL121877.1-201ENST00000453704 622 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.59□□□□□ -1.84
COL4A4P53420 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.59□□□□□ -1.84
COL4A4P53420 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL4A4P53420 AC113430.1-201ENST00000506872 718 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.59□□□□□ -1.84
COL4A4P53420 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 HIGD1AP3-201ENST00000515857 278 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.59□□□□□ -1.84
COL4A4P53420 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.59□□□□□ -1.84
COL4A4P53420 AL121766.1-201ENST00000547436 487 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 AC103968.1-201ENST00000557841 573 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 AC106785.3-201ENST00000564064 847 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 AC092474.3-201ENST00000603022 568 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 RNVU1-4-201ENST00000612985 164 ntBASIC3.59□□□□□ -1.84
COL4A4P53420 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.59□□□□□ -1.84
COL4A4P53420 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A4P53420 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A4P53420 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
COL4A4P53420 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
COL4A4P53420 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
COL4A4P53420 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL4A4P53420 OR56A5-201ENST00000340110 738 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 FTLP6-201ENST00000355274 422 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 RNU1-70P-201ENST00000362618 164 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 RNA5SP235-201ENST00000365411 114 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 BX890604.2-201ENST00000427883 474 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 MRPS31P2-201ENST00000451581 518 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 AC023598.1-201ENST00000472521 361 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A4P53420 RPS6P4-201ENST00000494693 758 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 AC098862.1-201ENST00000504991 413 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 AC008885.1-201ENST00000514930 301 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A4P53420 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A4P53420 AC135001.1-201ENST00000544546 283 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 WDR61-205ENST00000558459 884 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A4P53420 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.58□□□□□ -1.84
COL4A4P53420 AP003117.1-201ENST00000602771 554 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 TUG1_1.1-201ENST00000610654 145 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 AC084782.3-201ENST00000612282 578 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 AC007998.5-201ENST00000622938 237 ntBASIC3.58□□□□□ -1.84
COL4A4P53420 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A4P53420 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A4P53420 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC3.58□□□□□ -1.84
COL4A4P53420 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
COL4A4P53420 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A4P53420 AC005332.5-201ENST00000591222 2919 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
COL4A4P53420 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A4P53420 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL4A4P53420 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A4P53420 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
COL4A4P53420 AP002088.1-201ENST00000382740 395 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 NACAP7-201ENST00000407371 609 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 Z98941.1-201ENST00000407764 100 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 RHEBP3-201ENST00000411920 351 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A4P53420 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC3.57□□□□□ -1.84
COL4A4P53420 AP000949.1-201ENST00000438328 629 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 ATP5C1P1-201ENST00000441945 895 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC008676.3-201ENST00000521237 435 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A4P53420 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A4P53420 AC113192.3-201ENST00000529152 742 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A4P53420 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.57□□□□□ -1.84
COL4A4P53420 HIGD1AP1-201ENST00000550979 275 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.57□□□□□ -1.84
COL4A4P53420 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.57□□□□□ -1.84
COL4A4P53420 AL157394.1-201ENST00000562983 1224 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 DNAJC19P3-201ENST00000594491 331 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 BNIP3P38-201ENST00000601117 544 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC015802.5-201ENST00000607478 399 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC110792.4-201ENST00000609843 298 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC063944.3-201ENST00000609969 533 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC253576.2-201ENST00000618815 580 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 AC009269.6-201ENST00000621778 588 ntBASIC3.57□□□□□ -1.84
COL4A4P53420 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms