Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GTF2IP9-201ENST00000502460 301 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC110760.3-202ENST00000515177 371 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AC021451.1-201ENST00000523498 1129 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC068993.1-201ENST00000546724 589 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC025260.1-201ENST00000548858 430 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 SULT1C2P2-201ENST00000562517 294 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 ZNF415P1-201ENST00000582279 1166 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.84□□□□□ -1.63
HOXC9P31274 RPAP2P1-201ENST00000603626 1168 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.63
HOXC9P31274 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.84□□□□□ -1.64
HOXC9P31274 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HOXC9P31274 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 RNA5SP27-201ENST00000363839 119 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXC9P31274 AL603865.2-201ENST00000401679 213 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 RNA5SP306-201ENST00000411087 107 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 VTA1P1-201ENST00000414044 866 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 ELOCP18-201ENST00000434209 337 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 NDUFB1P1-201ENST00000435191 180 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AL606517.1-201ENST00000446914 387 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AL035551.1-201ENST00000446931 348 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC115115.1-201ENST00000449927 248 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC9P31274 AC098824.1-201ENST00000453565 980 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC008280.2-201ENST00000455473 307 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 RN7SL601P-201ENST00000471221 293 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC9P31274 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.83□□□□□ -1.64
HOXC9P31274 OR4A2P-201ENST00000527276 913 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 OR5AK3P-201ENST00000527486 1297 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC118942.1-201ENST00000529674 1035 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC023161.2-201ENST00000551218 780 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC011611.5-201ENST00000552477 578 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 AC069431.2-201ENST00000604149 1099 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AL163642.2-201ENST00000604722 1019 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.83□□□□□ -1.64
HOXC9P31274 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 AC073569.3-201ENST00000619055 682 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AC069209.1-201ENST00000619282 651 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 AP001002.2-201ENST00000625137 386 ntBASIC4.83□□□□□ -1.64
HOXC9P31274 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HOXC9P31274 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXC9P31274 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
HOXC9P31274 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXC9P31274 GTF2H2B-203ENST00000508065 1432 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
HOXC9P31274 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HOXC9P31274 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXC9P31274 RNU4-35P-201ENST00000362588 141 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXC9P31274 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXC9P31274 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 UBE2V1P9-201ENST00000414760 368 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC073310.1-201ENST00000423226 1033 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC005300.1-201ENST00000428401 373 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC005326.1-201ENST00000429197 123 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC087650.1-201ENST00000431445 468 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 RPL12P18-201ENST00000437175 325 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AL353093.1-201ENST00000441292 436 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 snoU109.3-201ENST00000459477 145 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC104164.3-201ENST00000467363 1258 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC025518.1-201ENST00000479856 347 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.82□□□□□ -1.64
HOXC9P31274 AC108471.1-201ENST00000513977 287 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 SNORA19.3-201ENST00000516165 130 ntBASIC4.82□□□□□ -1.64
HOXC9P31274 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXC9P31274 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXC9P31274 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms