Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 Z73965.1-201ENST00000623412 2297 ntBASIC4.9□□□□□ -1.62
DKK3Q9UBP4 AC018529.3-201ENST00000624212 2254 ntBASIC4.9□□□□□ -1.62
DKK3Q9UBP4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.9□□□□□ -1.62
DKK3Q9UBP4 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 RNU6-253P-201ENST00000384730 105 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL663109.1-201ENST00000411498 844 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC073069.1-201ENST00000428657 441 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC092809.1-201ENST00000441469 474 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AP000936.2-201ENST00000447151 681 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL034418.1-201ENST00000448675 860 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 OR1H1P-201ENST00000448731 937 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 RPS5P7-201ENST00000456664 608 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC091965.2-201ENST00000512324 613 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 RN7SKP31-201ENST00000516354 278 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC091042.1-201ENST00000579213 173 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC234771.5-201ENST00000600161 514 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AP004247.3-201ENST00000608682 624 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL121873.1-201ENST00000616013 524 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL356121.2-201ENST00000624715 780 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 AL445437.1-201ENST00000623157 3087 ntBASIC4.9□□□□□ -1.63
DKK3Q9UBP4 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
DKK3Q9UBP4 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC100778.3-201ENST00000580060 1750 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 RNU4-21P-201ENST00000362802 126 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 RNU6-839P-201ENST00000363347 108 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 Y_RNA.408-201ENST00000383987 102 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 TMSB4XP8-201ENST00000402089 135 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 TMSB4XP6-201ENST00000415187 135 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 MTCO2P34-201ENST00000421994 607 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 TMSB4XP1-201ENST00000424567 135 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 OR2AH1P-201ENST00000425717 928 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 MED14P1-201ENST00000430517 648 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 MTCYBP1-201ENST00000454315 1119 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 CBX3P3-201ENST00000508108 532 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC022447.1-201ENST00000515358 464 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 RNA5SP497-201ENST00000516081 97 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 SNORA74C-1-201ENST00000580726 201 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 MIR3611-201ENST00000584484 83 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC090181.2-201ENST00000602975 672 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC079089.3-201ENST00000603094 673 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AL121932.1-201ENST00000605542 214 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC005962.2-201ENST00000611427 652 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC015540.1-201ENST00000615828 501 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC009509.4-201ENST00000619202 509 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 AC018755.4-201ENST00000619715 454 ntBASIC4.89□□□□□ -1.63
DKK3Q9UBP4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
DKK3Q9UBP4 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms