Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 RNU1-15P-201ENST00000353977 144 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 RNU6-1151P-201ENST00000384684 107 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL079342.2-201ENST00000403367 482 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 BTF3P8-201ENST00000414577 526 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL138785.1-201ENST00000425821 331 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 RPS26P40-201ENST00000435209 294 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC234064.1-201ENST00000436312 247 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 HMGB3P6-201ENST00000444896 598 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 FGF7P3-201ENST00000454645 303 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC104164.2-201ENST00000496953 495 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 ARL4AP1-201ENST00000503220 705 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC113420.1-201ENST00000507903 571 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 STMN1P2-201ENST00000508435 439 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC008694.2-201ENST00000517591 306 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 HIGD1AP6-201ENST00000521833 279 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 IFITM8P-201ENST00000522529 394 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC100770.1-201ENST00000532310 322 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL442163.2-201ENST00000553912 710 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL132857.1-201ENST00000555180 708 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 NF1P5-201ENST00000588287 448 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 CCDC58P3-201ENST00000590792 430 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL606490.9-201ENST00000603331 271 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AL365400.2-201ENST00000605604 902 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC099669.2-201ENST00000616549 437 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC010975.3-201ENST00000618727 978 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 AC000123.2-201ENST00000623124 461 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC3Q9BQI4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 MIR670-201ENST00000390142 98 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 ANAPC10P1-201ENST00000395991 556 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 RPF2P1-201ENST00000424137 906 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL031736.2-201ENST00000426573 787 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 PRELID3BP10-201ENST00000431957 584 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC023347.2-201ENST00000433994 462 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 Z80107.1-201ENST00000436830 412 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 OR10R1P-201ENST00000441524 1141 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC096992.1-201ENST00000459808 709 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 NAP1L1P3-201ENST00000462291 880 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC034236.1-201ENST00000469891 373 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC010683.1-201ENST00000473673 378 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 MTND6P6-201ENST00000478031 263 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AC004217.3-201ENST00000551552 878 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 AP001542.2-201ENST00000593141 364 ntBASIC4.03□□□□□ -1.76
CCDC3Q9BQI4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms