Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC42Q96M95 OR5D17P-201ENST00000531492 978 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AC005972.3-201ENST00000606304 481 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 SNORD39.4-201ENST00000620099 78 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AP003072.4-201ENST00000624580 310 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 SNORA50A-202ENST00000629536 136 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 GABPAP-201ENST00000419271 1356 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC42Q96M95 AL353746.1-201ENST00000566293 6881 ntBASIC3.6□□□□□ -1.83
CCDC42Q96M95 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC42Q96M95 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 RPL21P17-201ENST00000397467 475 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 HMGB1P13-201ENST00000406019 642 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC006960.1-201ENST00000419980 153 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 CST9LP2-201ENST00000437612 320 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 Z99127.3-201ENST00000448158 395 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 SNORD108-201ENST00000459332 71 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 RPS27P29-201ENST00000463110 252 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AP000873.1-201ENST00000463987 400 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC092451.1-201ENST00000480211 153 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC012170.1-201ENST00000495139 359 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 Vault.1-201ENST00000516474 102 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC068657.1-201ENST00000520807 306 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC103843.2-201ENST00000530523 682 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC037471.2-201ENST00000564941 598 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC136624.4-201ENST00000573044 370 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AC099676.1-201ENST00000608886 657 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 uc_338.1-201ENST00000612113 180 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 uc_338.9-201ENST00000617424 182 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 AL356321.1-201ENST00000621360 228 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 SRP72P2-201ENST00000344851 1979 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 DCAF13P3-201ENST00000561147 1334 ntBASIC3.59□□□□□ -1.83
CCDC42Q96M95 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC42Q96M95 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC42Q96M95 DDX6P1-205ENST00000441966 1436 ntBASIC3.59□□□□□ -1.84
CCDC42Q96M95 AC021755.1-201ENST00000559747 1447 ntBASIC3.59□□□□□ -1.84
CCDC42Q96M95 AC119744.1-201ENST00000454746 1715 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC42Q96M95 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC42Q96M95 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC42Q96M95 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 MIR124-3-201ENST00000384866 87 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC42Q96M95 HMGB3P23-201ENST00000414981 585 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC004975.1-201ENST00000428733 208 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 AL035458.1-201ENST00000433096 585 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 FTH1P1-201ENST00000437933 532 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 NOTCH2P1-201ENST00000443481 624 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC092185.1-201ENST00000491371 97 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 CEACAMP10-202ENST00000495431 496 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 FCF1P8-201ENST00000510322 597 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 SNORA70.17-201ENST00000516449 133 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC067959.1-201ENST00000604334 379 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 RMST_5.1-201ENST00000618704 126 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AC092159.4-201ENST00000624944 550 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC42Q96M95 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CCDC42Q96M95 AL365440.1-201ENST00000436135 2167 ntBASIC3.58□□□□□ -1.84
CCDC42Q96M95 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms