Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CUX1P39880 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC5.25□□□□□ -1.57
CUX1P39880 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC5.25□□□□□ -1.57
CUX1P39880 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
CUX1P39880 SNORA71.1-201ENST00000364523 117 ntBASIC5.25□□□□□ -1.57
CUX1P39880 ARF4P3-201ENST00000397387 509 ntBASIC5.25□□□□□ -1.57
CUX1P39880 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC5.25□□□□□ -1.57
CUX1P39880 MIR4738-201ENST00000579134 87 ntBASIC5.25□□□□□ -1.57
CUX1P39880 AC006272.2-201ENST00000594725 163 ntBASIC5.25□□□□□ -1.57
CUX1P39880 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC5.25□□□□□ -1.57
CUX1P39880 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC5.25□□□□□ -1.57
CUX1P39880 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CUX1P39880 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
CUX1P39880 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CUX1P39880 MAPK6PS3-201ENST00000403865 2162 ntBASIC5.24□□□□□ -1.57
CUX1P39880 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CUX1P39880 XGY1-201ENST00000381172 446 ntBASIC5.24□□□□□ -1.57
CUX1P39880 PCBP2P3-201ENST00000509726 843 ntBASIC5.24□□□□□ -1.57
CUX1P39880 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.24□□□□□ -1.57
CUX1P39880 DPRXP4-201ENST00000578053 568 ntBASIC5.24□□□□□ -1.57
CUX1P39880 VN1R90P-201ENST00000595717 726 ntBASIC5.24□□□□□ -1.57
CUX1P39880 uc_338.32-201ENST00000615087 172 ntBASIC5.24□□□□□ -1.57
CUX1P39880 AP003485.2-201ENST00000623636 610 ntBASIC5.24□□□□□ -1.57
CUX1P39880 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.24□□□□□ -1.57
CUX1P39880 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
CUX1P39880 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CUX1P39880 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CUX1P39880 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
CUX1P39880 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.23□□□□□ -1.57
CUX1P39880 FTLP6-201ENST00000355274 422 ntBASIC5.23□□□□□ -1.57
CUX1P39880 SNORA18.3-201ENST00000384122 132 ntBASIC5.23□□□□□ -1.57
CUX1P39880 DPPA2P2-201ENST00000418220 897 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AC011242.1-201ENST00000433596 1158 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC5.23□□□□□ -1.57
CUX1P39880 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CUX1P39880 RPS4XP13-201ENST00000483219 789 ntBASIC5.23□□□□□ -1.57
CUX1P39880 RPL7P47-201ENST00000497299 556 ntBASIC5.23□□□□□ -1.57
CUX1P39880 RPL12P22-201ENST00000519073 490 ntBASIC5.23□□□□□ -1.57
CUX1P39880 uc_338.1-201ENST00000612113 180 ntBASIC5.23□□□□□ -1.57
CUX1P39880 PCA3_2.1-201ENST00000612507 409 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AC007496.3-201ENST00000624987 3443 ntBASIC5.23□□□□□ -1.57
CUX1P39880 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CUX1P39880 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CUX1P39880 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC5.23□□□□□ -1.57
CUX1P39880 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CUX1P39880 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CUX1P39880 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CUX1P39880 AL139281.1-201ENST00000422120 335 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AL513174.1-201ENST00000423182 629 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC5.23□□□□□ -1.57
CUX1P39880 AL109933.2-201ENST00000452651 260 ntBASIC5.23□□□□□ -1.57
CUX1P39880 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.23□□□□□ -1.57
CUX1P39880 HIGD1AP13-201ENST00000509878 289 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.23□□□□□ -1.57
CUX1P39880 LYZ-203ENST00000549690 669 ntTSL 2 BASIC5.23□□□□□ -1.57
CUX1P39880 CYP2C60P-201ENST00000566088 139 ntBASIC5.23□□□□□ -1.57
CUX1P39880 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC5.23□□□□□ -1.57
CUX1P39880 AC136601.2-201ENST00000604356 474 ntBASIC5.23□□□□□ -1.57
CUX1P39880 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CUX1P39880 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CUX1P39880 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CUX1P39880 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CUX1P39880 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CUX1P39880 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CUX1P39880 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CUX1P39880 AC096644.4-201ENST00000563417 2912 ntBASIC5.22□□□□□ -1.57
CUX1P39880 RNU1-89P-201ENST00000384592 164 ntBASIC5.22□□□□□ -1.57
CUX1P39880 RN7SKP222-201ENST00000410651 315 ntBASIC5.22□□□□□ -1.57
CUX1P39880 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CUX1P39880 AC010307.1-201ENST00000467206 836 ntBASIC5.22□□□□□ -1.57
CUX1P39880 AC090543.2-201ENST00000483963 348 ntBASIC5.22□□□□□ -1.57
CUX1P39880 MIR2276-201ENST00000516886 89 ntBASIC5.22□□□□□ -1.57
CUX1P39880 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.22□□□□□ -1.57
CUX1P39880 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CUX1P39880 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC5.22□□□□□ -1.57
CUX1P39880 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.22□□□□□ -1.57
CUX1P39880 AL359715.5-201ENST00000623431 443 ntBASIC5.22□□□□□ -1.57
CUX1P39880 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
CUX1P39880 AP003122.5-201ENST00000527668 3766 ntBASIC5.21□□□□□ -1.57
CUX1P39880 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CUX1P39880 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CUX1P39880 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
CUX1P39880 OOSP1P1-201ENST00000423265 274 ntBASIC5.21□□□□□ -1.58
CUX1P39880 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.21□□□□□ -1.58
CUX1P39880 AC010306.1-201ENST00000523223 1117 ntBASIC5.21□□□□□ -1.58
CUX1P39880 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.21□□□□□ -1.58
CUX1P39880 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC5.21□□□□□ -1.58
CUX1P39880 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC5.21□□□□□ -1.58
CUX1P39880 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.21□□□□□ -1.58
CUX1P39880 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CUX1P39880 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
CUX1P39880 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
CUX1P39880 RPS24P12-201ENST00000402084 394 ntBASIC5.2□□□□□ -1.58
CUX1P39880 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.2□□□□□ -1.58
CUX1P39880 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC5.2□□□□□ -1.58
CUX1P39880 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC5.2□□□□□ -1.58
CUX1P39880 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
CUX1P39880 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CUX1P39880 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CUX1P39880 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms