Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 SMG1P5-202ENST00000529428 4219 ntBASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 SMG1P2-201ENST00000566127 4221 ntBASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 PABPC1P8-201ENST00000452851 2086 ntBASIC8.33□□□□□ -1.08
TRIM35Q9UPQ4 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 CASC19-284ENST00000642142 1868 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-215P-201ENST00000365169 102 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RNA5SP279-201ENST00000365513 117 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-641P-201ENST00000384006 107 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-441P-201ENST00000384545 106 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RN7SKP126-201ENST00000411143 300 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 OR3D1P-201ENST00000438288 955 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 OR7E116P-201ENST00000448529 957 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 NUTF2P3-201ENST00000448540 384 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RN7SL369P-201ENST00000477138 299 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RPS27P26-201ENST00000494583 239 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RNA5SP473-201ENST00000516402 125 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RN7SKP98-201ENST00000517070 156 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 HMGN1P28-201ENST00000521340 364 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AC007991.1-201ENST00000522680 631 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 CYCSP25-201ENST00000525280 316 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 HIGD1AP5-201ENST00000529959 259 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 OLR1-209ENST00000543993 822 ntTSL 2 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AC133644.2-201ENST00000608142 540 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AL080312.2-201ENST00000613001 630 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AP001486.3-201ENST00000615334 372 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AL159153.1-201ENST00000619688 317 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AC011155.2-201ENST00000623202 216 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 AKAP17BP-201ENST00000431706 2719 ntBASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC8.32□□□□□ -1.08
TRIM35Q9UPQ4 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC105235.1-201ENST00000623208 1816 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 IGKV7-3-201ENST00000357453 298 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RNA5SP394-201ENST00000364216 119 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-153P-201ENST00000364422 104 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 SNORA51.11-201ENST00000384442 131 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RNA5SP105-201ENST00000391123 113 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AL031679.1-201ENST00000400616 525 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RN7SKP86-201ENST00000410454 332 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RNU6-272P-201ENST00000411028 104 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RPS17P17-201ENST00000419392 409 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC096920.1-201ENST00000423991 241 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC099782.1-201ENST00000425889 474 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC104339.1-201ENST00000465478 348 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC091021.1-201ENST00000468051 388 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 OR9A1P-202ENST00000484361 945 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC018797.1-201ENST00000510791 255 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC024405.2-202ENST00000532731 184 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC073410.2-201ENST00000603240 332 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AC015712.7-201ENST00000615211 635 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AL357559.1-201ENST00000622228 274 ntBASIC8.31□□□□□ -1.08
TRIM35Q9UPQ4 AP000866.6-201ENST00000638898 3579 ntBASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms