Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 Z73965.1-201ENST00000623412 2297 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 ATP5F1P3-201ENST00000397213 657 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 OR51A3P-201ENST00000413596 924 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 MTCYBP32-201ENST00000427945 1084 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 HMGB3P5-201ENST00000428894 612 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC146944.2-203ENST00000502493 354 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 NPM1P41-201ENST00000512920 831 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC139495.1-202ENST00000513164 354 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 snoZ278.1-201ENST00000517059 112 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC090819.1-201ENST00000523800 1111 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 MTCO3P15-201ENST00000526563 574 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 OR4A2P-201ENST00000527276 913 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC139103.1-201ENST00000534696 1030 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 RN7SL703P-201ENST00000578485 302 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 MIR3158-1-201ENST00000583596 81 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AL160237.3-201ENST00000604114 1013 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 AC034229.4-201ENST00000607861 441 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 SAGE2P-201ENST00000420011 2126 ntBASIC4.06□□□□□ -1.76
CCDC3Q9BQI4 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC067945.1-201ENST00000342609 618 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 RN7SKP159-201ENST00000410657 292 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 RN7SKP167-201ENST00000411047 285 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 RPS23P10-201ENST00000416185 486 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 CYCSP10-201ENST00000417973 294 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 ABCF2P2-201ENST00000450549 296 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 HMGB3P21-201ENST00000452483 547 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 RNA5SP246-201ENST00000458909 119 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 RPL21P71-201ENST00000465598 459 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 GAPDHP39-201ENST00000481866 979 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC126121.1-201ENST00000482313 553 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 RPS27P23-201ENST00000487608 251 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC022655.2-201ENST00000577280 318 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 PART1_2.1-201ENST00000612397 250 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC243756.2-201ENST00000618406 463 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AC068787.1-201ENST00000623908 691 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 OR8B1P-202ENST00000641132 1178 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 AL049555.1-201ENST00000562834 1933 ntBASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CCDC3Q9BQI4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms