Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RFC5P1-201ENST00000454419 874 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 RPS4XP12-201ENST00000461747 709 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 RN7SL459P-201ENST00000481078 302 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC022133.1-201ENST00000490961 571 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC108941.1-201ENST00000502853 530 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC105252.1-201ENST00000503089 286 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AC022483.1-201ENST00000514020 567 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 RNA5SP230-201ENST00000517039 122 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC5.18□□□□□ -1.58
USP39Q53GS9 OR5AL2P-201ENST00000532185 920 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.18□□□□□ -1.58
USP39Q53GS9 AC027369.5-201ENST00000533838 755 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 OR5AN2P-201ENST00000534535 896 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 NMNAT1P1-201ENST00000554095 876 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.18□□□□□ -1.58
USP39Q53GS9 MTCYBP13-201ENST00000578634 1093 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 MIR548AB-201ENST00000584917 84 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.18□□□□□ -1.58
USP39Q53GS9 BNIP3P9-201ENST00000603714 553 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AL627230.1-201ENST00000613077 211 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AL591926.8-201ENST00000616876 211 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 AC021106.3-201ENST00000623925 531 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
USP39Q53GS9 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 PABPC1P9-201ENST00000426076 1612 ntBASIC5.18□□□□□ -1.58
USP39Q53GS9 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
USP39Q53GS9 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.18□□□□□ -1.58
USP39Q53GS9 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.17□□□□□ -1.58
USP39Q53GS9 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 CBX3P1-201ENST00000325243 554 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 RNU6-543P-201ENST00000362576 108 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 SNORA4.1-201ENST00000364263 144 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 Y_RNA.450-201ENST00000384198 113 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP39Q53GS9 CYCSP45-201ENST00000402289 315 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 NCSTNP1-201ENST00000406229 144 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC5.17□□□□□ -1.58
USP39Q53GS9 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC5.17□□□□□ -1.58
USP39Q53GS9 AC119751.6-201ENST00000416712 186 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AL139413.1-201ENST00000421309 217 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 FO393419.3-201ENST00000428741 282 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 BTF3P10-201ENST00000433415 495 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.17□□□□□ -1.58
USP39Q53GS9 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.17□□□□□ -1.58
USP39Q53GS9 HMGB1P16-201ENST00000447155 540 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 RPL10P17-201ENST00000453852 316 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 PNPLA4P1-201ENST00000458328 305 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AL672167.3-201ENST00000465951 960 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 RN7SL319P-201ENST00000480656 221 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 ACTG1P13-201ENST00000486987 1043 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.17□□□□□ -1.58
USP39Q53GS9 MTND5P5-201ENST00000503764 376 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.17□□□□□ -1.58
USP39Q53GS9 OR7H2P-201ENST00000513483 306 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.17□□□□□ -1.58
USP39Q53GS9 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.17□□□□□ -1.58
USP39Q53GS9 UBE2FP2-201ENST00000566646 462 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.17□□□□□ -1.58
USP39Q53GS9 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.17□□□□□ -1.58
USP39Q53GS9 MIR4660-201ENST00000583549 74 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AC098614.4-201ENST00000607601 462 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AL354760.1-201ENST00000608357 643 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AP004607.9-201ENST00000618202 316 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 FER-210ENST00000628534 558 ntTSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 LRRC77P-213ENST00000637727 880 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP39Q53GS9 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
USP39Q53GS9 AC109315.1-201ENST00000584143 1347 ntBASIC5.17□□□□□ -1.58
USP39Q53GS9 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.17□□□□□ -1.58
USP39Q53GS9 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
USP39Q53GS9 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 UGT2B26P-201ENST00000508672 1613 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 AL157700.1-201ENST00000561973 1432 ntBASIC5.16□□□□□ -1.58
USP39Q53GS9 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USP39Q53GS9 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 154.4 ms