Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC114322.1-201ENST00000506771 926 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 SNORA67.7-201ENST00000516664 135 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 RN7SKP96-201ENST00000516948 297 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AP001207.1-201ENST00000524051 481 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC007424.1-203ENST00000554613 687 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC009097.3-201ENST00000563557 1018 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 MIR3912-201ENST00000577566 105 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 MIR3944-201ENST00000581277 108 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 MIR3939-201ENST00000582614 106 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC245036.5-201ENST00000596330 847 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 VN1R78P-201ENST00000597393 564 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC009464.1-201ENST00000615731 469 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 ZYXP1-201ENST00000617638 118 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL157770.1-201ENST00000623049 439 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 OR6C71P-202ENST00000641886 1107 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AC010300.1-201ENST00000600671 5134 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 DCAF13P1-201ENST00000495256 1330 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 EOGT-210ENST00000615922 1931 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 AL672167.1-203ENST00000641299 2975 ntBASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PDLIM3Q53GG5 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RNU6-582P-201ENST00000362989 107 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP447-201ENST00000363749 119 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 SNORA62.3-201ENST00000365110 153 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RNU6-1151P-201ENST00000384684 107 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 TAS2R15P-201ENST00000390674 928 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP372-201ENST00000390836 115 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 SNORD65.1-201ENST00000390889 71 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL080315.1-201ENST00000406055 466 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RNU2-42P-201ENST00000410697 113 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL136133.1-201ENST00000413694 376 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RPL21P108-201ENST00000413857 481 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL008987.1-201ENST00000415528 237 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 TBCAP2-201ENST00000416175 326 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC005005.2-201ENST00000420779 380 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC010099.3-201ENST00000423896 409 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RPL36P19-201ENST00000430744 301 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RPL34P20-201ENST00000442771 351 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC007327.1-201ENST00000447461 264 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC004022.1-201ENST00000447766 1066 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC104689.1-201ENST00000473356 768 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RPS4XP18-201ENST00000495480 763 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 SNX5P1-201ENST00000505757 1041 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC090071.1-201ENST00000507713 644 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC021146.3-201ENST00000511911 260 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 Vault.1-201ENST00000516474 102 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RN7SKP234-201ENST00000517173 224 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 MTCO1P49-201ENST00000523429 802 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 CYCSP28-201ENST00000534284 321 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC074029.1-201ENST00000552531 1044 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL352979.3-201ENST00000553515 247 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 EIF5A2P1-201ENST00000564027 460 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 MIR4444-1-201ENST00000581696 74 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RN7SL690P-201ENST00000582087 240 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms