Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RN7SL565P-201ENST00000618246 284 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 MIR6839-201ENST00000620425 113 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 PANDAR-201ENST00000629595 1506 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 INTS6P1-201ENST00000504674 2530 ntBASIC3.98□□□□□ -1.77
HOXD3P31249 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC3.98□□□□□ -1.77
HOXD3P31249 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
HOXD3P31249 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.98□□□□□ -1.77
HOXD3P31249 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL450345.1-202ENST00000605741 3881 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 MAPK10-304ENST00000641341 3984 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXD3P31249 MIR141-201ENST00000384975 95 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 MIR506-201ENST00000384998 124 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 VN1R8P-201ENST00000407739 893 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 FCF1P9-201ENST00000412546 282 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 RPL21P108-201ENST00000413857 481 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 RPL7P30-201ENST00000420888 709 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC092017.2-201ENST00000427600 362 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 RPL36P19-201ENST00000430744 301 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 TEX41-205ENST00000431734 529 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL831737.1-201ENST00000441288 271 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC109927.2-201ENST00000506416 303 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AF131216.2-201ENST00000512316 564 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXD3P31249 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 AC006499.2-201ENST00000513470 337 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 FABP5P5-201ENST00000515537 406 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AP002748.2-201ENST00000528671 348 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC3.97□□□□□ -1.77
HOXD3P31249 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 SERPINE4P-201ENST00000554978 281 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC091489.2-201ENST00000566263 604 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC090312.1-201ENST00000580637 348 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXD3P31249 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
HOXD3P31249 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXD3P31249 AC068944.2-201ENST00000610373 403 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC138749.5-201ENST00000611461 208 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC243773.3-201ENST00000613270 256 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 uc_338.18-201ENST00000615451 175 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 MIR6810-201ENST00000622701 70 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 AC091932.2-201ENST00000623014 291 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXD3P31249 IRF5P1-201ENST00000504852 2164 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
HOXD3P31249 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 AC025125.1-201ENST00000624743 1922 ntBASIC3.97□□□□□ -1.77
HOXD3P31249 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXD3P31249 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
HOXD3P31249 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.77
HOXD3P31249 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC006210.2-201ENST00000367074 1545 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXD3P31249 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXD3P31249 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 187.7 ms