Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 SNRPGP6-201ENST00000451124 220 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 SNRPFP4-201ENST00000456366 242 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 RPL23AP37-201ENST00000479658 549 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC090013.1-201ENST00000485147 480 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 RPL15P21-201ENST00000495592 567 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 NDUFB4P2-201ENST00000509515 391 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 MTND6P2-201ENST00000512226 524 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 RNU6-264P-201ENST00000517134 104 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC107954.1-201ENST00000565906 727 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC007363.1-201ENST00000604736 620 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AC107214.2-201ENST00000608204 634 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AP001521.2-201ENST00000608772 546 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AL442067.1-201ENST00000613261 223 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AL118522.2-201ENST00000616045 615 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 AP000648.2-201ENST00000624182 404 ntBASIC6.15□□□□□ -1.42
CCDC39Q9UFE4 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC39Q9UFE4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC39Q9UFE4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC39Q9UFE4 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC39Q9UFE4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC39Q9UFE4 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC39Q9UFE4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 RPL21P132-201ENST00000331267 462 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 RNU6-845P-201ENST00000362578 103 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL078599.1-201ENST00000402075 293 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL359643.1-201ENST00000404109 423 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL356432.1-201ENST00000405809 419 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AP000357.1-201ENST00000409926 1165 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 RN7SKP286-201ENST00000410894 299 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC010385.1-201ENST00000412374 256 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 Z93019.1-201ENST00000416450 973 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 OFD1P12Y-201ENST00000427963 1207 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL050321.1-201ENST00000432363 400 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 RPL12P17-201ENST00000432393 498 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC002542.1-201ENST00000440683 193 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC019185.1-201ENST00000442718 389 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC073109.1-201ENST00000445066 978 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 ARPC3P5-201ENST00000448802 534 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC140076.1-201ENST00000449897 361 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC233279.1-201ENST00000455300 423 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL590639.1-201ENST00000456484 337 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC087312.1-201ENST00000471411 480 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC087808.1-201ENST00000520501 361 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 OR5M7P-201ENST00000526140 972 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 OR5AP1P-201ENST00000529730 940 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 BNIP3P1-201ENST00000547295 580 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL390726.5-202ENST00000564800 256 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC025678.1-201ENST00000567861 338 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC090425.1-201ENST00000610007 140 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AC132068.1-201ENST00000623805 459 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 AP005432.1-201ENST00000580891 3485 ntBASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC39Q9UFE4 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms