Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL356535.1-201ENST00000440335 398 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 HMGN2P16-201ENST00000456802 261 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 snoU13.3-201ENST00000459441 104 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AL049830.2-201ENST00000480072 201 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 RN7SL812P-201ENST00000493791 279 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 RN7SKP122-201ENST00000515923 296 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AP001781.1-201ENST00000530977 207 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC092470.1-201ENST00000546187 132 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 LINC00557-201ENST00000563184 1279 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC244505.7-201ENST00000599675 272 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC008782.1-201ENST00000603386 430 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 MIR6716-201ENST00000613413 80 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AL391261.4-201ENST00000616012 481 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 AC006963.1-201ENST00000624003 1052 ntBASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.89□□□□□ -1.79
ZNF540Q8NDQ6 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 FAM35DP-201ENST00000323387 2712 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 RNA5SP322-201ENST00000363617 119 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MTND3P20-201ENST00000407663 186 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AL356387.2-201ENST00000422272 243 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC010881.1-201ENST00000433830 235 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AF228730.2-201ENST00000438784 848 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC114495.1-201ENST00000441274 436 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MTND2P3-201ENST00000452458 470 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 RAD23BP3-201ENST00000454157 1152 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 PPIAP15-201ENST00000479662 484 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 RPS27P23-201ENST00000487608 251 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 RN7SL810P-201ENST00000493031 276 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 NIPA2P2-201ENST00000496376 1083 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC106806.2-201ENST00000509365 500 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC090948.1-201ENST00000607464 549 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC128687.2-201ENST00000609657 566 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AL445423.1-201ENST00000609941 536 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MIR6891-201ENST00000618788 93 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AL163051.2-201ENST00000618976 735 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 AC132825.7-201ENST00000638744 335 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 MTND4P34-201ENST00000572715 1371 ntBASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.88□□□□□ -1.79
ZNF540Q8NDQ6 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-374P-201ENST00000364146 108 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 RNU6-796P-201ENST00000391086 107 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL592293.2-201ENST00000422292 996 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 EIF1P3-201ENST00000423841 334 ntBASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.87□□□□□ -1.79
ZNF540Q8NDQ6 AL132765.1-201ENST00000434165 553 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms