Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SETP15-201ENST00000412724 337 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AC007899.1-201ENST00000412776 775 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 CCDC75P1-201ENST00000469247 791 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AC087312.1-201ENST00000471411 480 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A3P25940 HIGD1AP3-201ENST00000515857 278 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 AC087276.1-201ENST00000529659 480 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.04□□□□□ -1.76
COL5A3P25940 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL5A3P25940 AC233263.6-201ENST00000631132 1963 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
COL5A3P25940 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.03□□□□□ -1.76
COL5A3P25940 AC018529.3-201ENST00000624212 2254 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 RNA5SP322-201ENST00000363617 119 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 AL139095.1-201ENST00000404326 391 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 ETF1P3-201ENST00000430422 1160 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 SKP1P1-201ENST00000438081 489 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 RPL23AP67-201ENST00000465341 474 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 VN1R104P-201ENST00000505115 1009 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.03□□□□□ -1.76
COL5A3P25940 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.03□□□□□ -1.76
COL5A3P25940 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.03□□□□□ -1.76
COL5A3P25940 AC015849.2-201ENST00000605738 409 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 AC096644.4-201ENST00000563417 2912 ntBASIC4.03□□□□□ -1.76
COL5A3P25940 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL5A3P25940 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.03□□□□□ -1.76
COL5A3P25940 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC4.03□□□□□ -1.77
COL5A3P25940 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A3P25940 ZNF90P1-201ENST00000480493 1951 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A3P25940 AC083843.2-201ENST00000568248 6253 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A3P25940 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 MTND2P11-201ENST00000423638 648 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
COL5A3P25940 AL135938.1-201ENST00000443141 297 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 AC140076.1-201ENST00000449897 361 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.02□□□□□ -1.77
COL5A3P25940 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.02□□□□□ -1.77
COL5A3P25940 RN7SKP132-201ENST00000516001 208 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 AC107934.2-201ENST00000518653 310 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.02□□□□□ -1.77
COL5A3P25940 ATP1B3P1-201ENST00000605365 821 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 AC244517.3-201ENST00000616254 1235 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.02□□□□□ -1.77
COL5A3P25940 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.02□□□□□ -1.77
COL5A3P25940 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.02□□□□□ -1.77
COL5A3P25940 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
COL5A3P25940 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.02□□□□□ -1.77
COL5A3P25940 AC108206.1-201ENST00000570186 4159 ntBASIC4.02□□□□□ -1.77
COL5A3P25940 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A3P25940 SNORA71.1-201ENST00000364523 117 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 NUP35P1-201ENST00000422734 947 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 S100A11P1-201ENST00000477525 312 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 RPL7P47-201ENST00000497299 556 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 RN7SKP116-201ENST00000516902 319 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AC015917.1-201ENST00000579654 510 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
COL5A3P25940 KPNA2P2-201ENST00000419546 1489 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.01□□□□□ -1.77
COL5A3P25940 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A3P25940 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A3P25940 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A3P25940 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
COL5A3P25940 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.01□□□□□ -1.77
COL5A3P25940 AL121834.1-202ENST00000404494 277 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.01□□□□□ -1.77
COL5A3P25940 SETP5-201ENST00000437270 562 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.01□□□□□ -1.77
COL5A3P25940 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.01□□□□□ -1.77
COL5A3P25940 AC027309.2-201ENST00000520566 192 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 OR10D4P-201ENST00000525892 951 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AC099489.2-201ENST00000574976 260 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AC241377.1-201ENST00000619797 406 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AC103858.2-201ENST00000621471 543 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AL353684.1-201ENST00000622677 1120 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.01□□□□□ -1.77
COL5A3P25940 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
COL5A3P25940 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
COL5A3P25940 AL451142.2-201ENST00000429076 2090 ntBASIC4.01□□□□□ -1.77
COL5A3P25940 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
COL5A3P25940 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4□□□□□ -1.77
COL5A3P25940 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL5A3P25940 AC007496.3-201ENST00000624987 3443 ntBASIC4□□□□□ -1.77
COL5A3P25940 RPS24P13-201ENST00000442520 397 ntBASIC4□□□□□ -1.77
COL5A3P25940 AP000859.1-201ENST00000525536 307 ntBASIC4□□□□□ -1.77
COL5A3P25940 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4□□□□□ -1.77
COL5A3P25940 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4□□□□□ -1.77
COL5A3P25940 AC013412.1-201ENST00000610687 192 ntBASIC4□□□□□ -1.77
COL5A3P25940 MIR4727-201ENST00000622232 55 ntBASIC4□□□□□ -1.77
COL5A3P25940 AC079298.2-201ENST00000623885 459 ntBASIC4□□□□□ -1.77
COL5A3P25940 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4□□□□□ -1.77
COL5A3P25940 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL5A3P25940 OR5BR1P-201ENST00000524992 1330 ntBASIC4□□□□□ -1.77
COL5A3P25940 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms