Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC090888.2-201ENST00000559765 1144 ntBASIC4.17□□□□□ -1.74
SIX2Q9NPC8 AC095057.3-201ENST00000567102 1157 ntBASIC4.17□□□□□ -1.74
SIX2Q9NPC8 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 AL590392.1-201ENST00000604960 446 ntBASIC4.17□□□□□ -1.74
SIX2Q9NPC8 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 MIR378J-201ENST00000611988 109 ntBASIC4.17□□□□□ -1.74
SIX2Q9NPC8 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 STMN1P1-201ENST00000617809 440 ntBASIC4.17□□□□□ -1.74
SIX2Q9NPC8 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SIX2Q9NPC8 AC073055.1-201ENST00000456901 1621 ntBASIC4.17□□□□□ -1.74
SIX2Q9NPC8 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 ENSAP3-201ENST00000312710 333 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 Y_RNA.578-201ENST00000390903 88 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 RPS26P8-201ENST00000393490 348 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 HLFP1-201ENST00000402375 499 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 SNORA11B-201ENST00000408175 129 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 LINC01881-201ENST00000416103 412 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 RPL7P29-201ENST00000437151 728 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 PTGES3P5-201ENST00000455109 434 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC079203.1-201ENST00000487972 404 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 TRBV12-2-201ENST00000489763 344 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 MTCYBP35-201ENST00000503630 1137 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC010627.1-201ENST00000503819 1294 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC113430.1-201ENST00000506872 718 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 RAC1P2-201ENST00000511164 579 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 MTND2P38-201ENST00000522536 667 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC083923.1-201ENST00000523708 376 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC107016.1-201ENST00000550463 337 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 NPM1P47-201ENST00000560843 856 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC090312.1-201ENST00000580637 348 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 CCDC58P3-201ENST00000590792 430 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC113368.1-201ENST00000603736 382 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AL121895.2-201ENST00000619558 447 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC011330.2-201ENST00000621680 635 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AC112484.5-201ENST00000624189 228 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 AL121594.5-201ENST00000631724 573 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.16□□□□□ -1.74
SIX2Q9NPC8 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX2Q9NPC8 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SIX2Q9NPC8 FAM35DP-201ENST00000323387 2712 ntBASIC4.15□□□□□ -1.74
SIX2Q9NPC8 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.74
SIX2Q9NPC8 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.15□□□□□ -1.74
SIX2Q9NPC8 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SIX2Q9NPC8 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 RNU4-51P-201ENST00000364206 140 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 RNU6-98P-201ENST00000384173 107 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 TAS2R15P-201ENST00000390674 928 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 ATP5F1P4-201ENST00000397288 746 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 MTCO1P56-201ENST00000401674 224 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 BTF3P8-201ENST00000414577 526 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 TAF13P2-201ENST00000416876 286 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 RPL21P109-201ENST00000422213 475 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 SNORA71B-202ENST00000439232 272 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 CR769776.1-201ENST00000441254 787 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL592437.1-201ENST00000443781 492 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 H2AFZP6-201ENST00000444403 394 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC099063.2-201ENST00000446360 662 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX2Q9NPC8 CDC42P1-201ENST00000456658 548 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 RNU7-27P-201ENST00000459281 62 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 RNU7-140P-201ENST00000459546 60 ntBASIC4.15□□□□□ -1.75
SIX2Q9NPC8 RN7SL93P-201ENST00000463035 293 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms