Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC006539.2-201ENST00000601729 572 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 IMMP1LP1-201ENST00000605170 488 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 AC018638.7-201ENST00000605836 1114 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 MIR378J-201ENST00000611988 109 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 MIR6758-201ENST00000620653 63 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 AC125257.1-201ENST00000560400 2930 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 AL031119.1-201ENST00000404707 1879 ntBASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.56□□□□□ -1.52
CHMP4CQ96CF2 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 SGO1P2-201ENST00000429458 1589 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AL450326.2-201ENST00000421913 1962 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC114546.3-201ENST00000623582 1734 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 SNORA68.2-201ENST00000391263 128 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 FABP12P1-201ENST00000401911 322 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 Z98745.1-201ENST00000402553 494 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 RN7SKP267-201ENST00000410381 285 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC009237.2-201ENST00000421358 284 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 RPL7P57-201ENST00000423238 740 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 YWHAZP7-201ENST00000436906 631 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ARL4AP3-201ENST00000441452 574 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 H2AFZP6-201ENST00000444403 394 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AL133217.1-201ENST00000450980 425 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC090142.1-201ENST00000465776 462 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ACTG1P13-201ENST00000486987 1043 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 RN7SKP31-201ENST00000516354 278 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC027309.2-201ENST00000520566 192 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ARL2BPP5-201ENST00000523141 481 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC008015.1-201ENST00000555505 465 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC074051.3-201ENST00000570238 358 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 RN7SL652P-201ENST00000577769 300 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC008088.1-201ENST00000580993 280 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AL596275.2-204ENST00000641628 552 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 AL596275.2-206ENST00000641957 626 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 CDR1-202ENST00000625883 1485 ntBASIC5.55□□□□□ -1.52
CHMP4CQ96CF2 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 OR5H2-201ENST00000355273 945 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 Y_RNA.25-201ENST00000362528 102 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 Y_RNA.408-201ENST00000383987 102 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 SNORD116-2-201ENST00000384274 95 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 SNORD116-8-201ENST00000384365 95 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 SNORD116-6-201ENST00000384711 96 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AL049697.2-201ENST00000403708 294 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 ARL4AP5-201ENST00000404372 599 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 ATG4AP1-201ENST00000416893 538 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 MTND4P20-201ENST00000424125 869 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 RPL31P54-201ENST00000429803 370 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 RPS20P1-201ENST00000434853 354 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AC105402.2-201ENST00000438503 358 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 SCARNA22-201ENST00000503991 125 ntBASIC5.54□□□□□ -1.52
CHMP4CQ96CF2 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms