Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 RNU6-851P-201ENST00000384565 107 ntBASIC2.6□□□□□ -1.99
VPS13CQ709C8 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS13CQ709C8 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13CQ709C8 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 RHOT1P2-201ENST00000366423 333 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 RPL21P109-201ENST00000422213 475 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 RPL21P40-201ENST00000428586 483 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13CQ709C8 SNORD109B-201ENST00000458961 67 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 SNORD109A-201ENST00000459128 67 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 RPS3AP50-201ENST00000487064 803 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13CQ709C8 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13CQ709C8 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 snoU13.23-201ENST00000458863 104 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 RPL31P50-201ENST00000471002 296 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 AL353600.1-201ENST00000608148 251 ntBASIC2.59□□□□□ -1.99
VPS13CQ709C8 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.99
VPS13CQ709C8 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13CQ709C8 TOMM20P4-201ENST00000427861 435 ntBASIC2.59□□□□□ -2
VPS13CQ709C8 FTLP19-201ENST00000433300 394 ntBASIC2.59□□□□□ -2
VPS13CQ709C8 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.59□□□□□ -2
VPS13CQ709C8 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.59□□□□□ -2
VPS13CQ709C8 MIR4435-1-201ENST00000582552 80 ntBASIC2.59□□□□□ -2
VPS13CQ709C8 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC2.59□□□□□ -2
VPS13CQ709C8 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC2.59□□□□□ -2
VPS13CQ709C8 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13CQ709C8 MTCO1P9-201ENST00000505577 1534 ntBASIC2.59□□□□□ -2
VPS13CQ709C8 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.59□□□□□ -2
VPS13CQ709C8 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13CQ709C8 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
VPS13CQ709C8 AC069540.1-201ENST00000446320 988 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.58□□□□□ -2
VPS13CQ709C8 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.58□□□□□ -2
VPS13CQ709C8 RNU6-991P-201ENST00000516168 107 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AC006518.1-201ENST00000541449 943 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
VPS13CQ709C8 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 SKP1P1-201ENST00000438081 489 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 RPSAP41-201ENST00000439695 860 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 ARL4AP1-201ENST00000503220 705 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AC026782.2-201ENST00000510845 636 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.58□□□□□ -2
VPS13CQ709C8 AP002812.4-201ENST00000532139 286 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AC087888.1-201ENST00000550884 1254 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 MIR4425-201ENST00000580572 84 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.58□□□□□ -2
VPS13CQ709C8 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC2.58□□□□□ -2
VPS13CQ709C8 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC2.58□□□□□ -2
VPS13CQ709C8 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
VPS13CQ709C8 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
VPS13CQ709C8 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS13CQ709C8 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 Y_RNA.226-201ENST00000364337 114 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AL445529.1-201ENST00000398713 389 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC2.58□□□□□ -2
VPS13CQ709C8 AL603825.1-201ENST00000438481 80 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 AC017037.1-201ENST00000508460 471 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AP002404.1-201ENST00000532005 451 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 AC024153.1-201ENST00000603103 365 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.58□□□□□ -2
VPS13CQ709C8 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13CQ709C8 AC017002.4-201ENST00000604721 1525 ntBASIC2.58□□□□□ -2
VPS13CQ709C8 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.57□□□□□ -2
VPS13CQ709C8 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
VPS13CQ709C8 DPPA2P2-201ENST00000418220 897 ntBASIC2.57□□□□□ -2
VPS13CQ709C8 TRGV5P-201ENST00000419915 354 ntBASIC2.57□□□□□ -2
VPS13CQ709C8 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC2.57□□□□□ -2
VPS13CQ709C8 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC2.57□□□□□ -2
VPS13CQ709C8 RN7SL594P-201ENST00000470590 287 ntBASIC2.57□□□□□ -2
VPS13CQ709C8 AC034159.1-201ENST00000513885 583 ntBASIC2.57□□□□□ -2
VPS13CQ709C8 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC2.57□□□□□ -2
VPS13CQ709C8 AC027287.1-201ENST00000553115 1453 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms